Variant report

Variant	rs16892048
Chromosome Location	chr6:81349285-81349286
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs11751136	0.87[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs11755775	0.80[EUR][1000 genomes]
rs11757148	0.80[EUR][1000 genomes]
rs11760053	0.87[AMR][1000 genomes]
rs16892042	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs16892086	0.87[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs55741904	0.82[AFR][1000 genomes];0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs59534131	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs73479784	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs73479786	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531333	chr6:81042427-81836484	Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
2	nsv1019670	chr6:81086504-81569984	ZNF genes & repeats Enhancers Active TSS Weak transcription Bivalent Enhancer Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
3	nsv915714	chr6:81134888-81366749	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
4	nsv1020533	chr6:81288890-81406533	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv538340	chr6:81288890-81406533	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv604085	chr6:81297890-81439973	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	nsv1015520	chr6:81309213-81374699	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
8	nsv886314	chr6:81341175-81379791	Weak transcription Enhancers Flanking Active TSS Active TSS	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:81346200-81349400	Enhancers	Osteobl	bone
2	chr6:81346200-81349600	Enhancers	NHLF	lung
3	chr6:81346800-81350600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr6:81347200-81349400	Enhancers	HUES64 Cell Line	embryonic stem cell
5	chr6:81347400-81349400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr6:81347800-81349400	Enhancers	iPS-20b Cell Line	embryonic stem cell
7	chr6:81347800-81349400	Enhancers	NH-A	brain
8	chr6:81347800-81349800	Enhancers	ES-I3 Cell Line	embryonic stem cell
9	chr6:81348000-81350600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr6:81348200-81349400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr6:81348200-81349400	Enhancers	iPS-18 Cell Line	embryonic stem cell
12	chr6:81348200-81349600	Enhancers	ES-WA7 Cell Line	embryonic stem cell
13	chr6:81348400-81349400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
14	chr6:81348400-81350200	Enhancers	Cortex derived primary cultured neurospheres	brain
15	chr6:81348800-81350600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr6:81348800-81359800	Weak transcription	H9 Cell Line	embryonic stem cell
17	chr6:81349000-81349400	Enhancers	HUVEC	blood vessel
18	chr6:81349000-81349600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
19	chr6:81349000-81349600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
20	chr6:81349000-81350600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
21	chr6:81349000-81352600	Weak transcription	Stomach Mucosa	stomach
22	chr6:81349200-81349800	Enhancers	Pancreatic Islets	Pancreatic Islet
23	chr6:81349200-81349800	Enhancers	A549	lung
24	chr6:81349200-81351400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
25	chr6:81349200-81351400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
26	chr6:81349200-81351400	Weak transcription	NHDF-Ad	bronchial
27	chr6:81349200-81351600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
28	chr6:81349200-81351600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
29	chr6:81349200-81351600	Weak transcription	Muscle Satellite Cultured Cells	--
30	chr6:81349200-81351600	Weak transcription	HSMM	muscle

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