Variant report

Variant	rs16892249
Chromosome Location	chr6:81482713-81482714
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 92 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:86)

rs_ID	r²[population]
rs10485283	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10485284	0.98[ASN][1000 genomes]
rs10485286	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11753704	0.86[ASN][1000 genomes]
rs11754366	0.98[ASN][1000 genomes]
rs11756075	0.98[ASN][1000 genomes]
rs11756729	0.95[ASN][1000 genomes]
rs11757791	0.98[ASN][1000 genomes]
rs12661422	0.86[EUR][1000 genomes]
rs12661465	0.83[EUR][1000 genomes]
rs12662185	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12662485	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12662681	0.98[ASN][1000 genomes]
rs12662716	0.98[ASN][1000 genomes]
rs12662746	0.98[ASN][1000 genomes]
rs12663226	0.83[EUR][1000 genomes]
rs12663298	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12663591	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12664505	0.95[ASN][1000 genomes]
rs13197064	0.98[ASN][1000 genomes]
rs13197173	0.98[ASN][1000 genomes]
rs13197256	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13197442	0.95[ASN][1000 genomes]
rs13198210	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13198536	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13201732	0.98[ASN][1000 genomes]
rs13208947	0.98[ASN][1000 genomes]
rs13211723	0.83[EUR][1000 genomes]
rs13212232	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13212944	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13213267	0.95[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs13219453	0.98[ASN][1000 genomes]
rs1598169	0.83[EUR][1000 genomes]
rs16892136	0.83[EUR][1000 genomes]
rs16892139	0.83[EUR][1000 genomes]
rs16892242	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16892247	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17777424	0.98[ASN][1000 genomes]
rs34173535	0.98[ASN][1000 genomes]
rs34192295	0.98[ASN][1000 genomes]
rs34391976	0.98[ASN][1000 genomes]
rs34394883	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs34504200	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs34687169	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs34691222	0.98[ASN][1000 genomes]
rs34884967	0.95[ASN][1000 genomes]
rs34899637	0.98[ASN][1000 genomes]
rs34957820	0.98[ASN][1000 genomes]
rs34969790	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs35052062	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs35090599	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35237645	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs35251642	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs35372769	0.98[ASN][1000 genomes]
rs35426056	0.83[EUR][1000 genomes]
rs35489422	0.83[EUR][1000 genomes]
rs35520373	0.98[ASN][1000 genomes]
rs35657455	0.95[ASN][1000 genomes]
rs35747646	0.95[ASN][1000 genomes]
rs36044530	0.83[EUR][1000 genomes]
rs4451106	0.98[ASN][1000 genomes]
rs56070062	0.98[ASN][1000 genomes]
rs58728621	0.98[ASN][1000 genomes]
rs60135513	0.98[ASN][1000 genomes]
rs60383384	0.95[ASN][1000 genomes]
rs61367693	0.98[ASN][1000 genomes]
rs66868615	0.98[ASN][1000 genomes]
rs67341284	0.98[ASN][1000 genomes]
rs67738363	0.98[ASN][1000 genomes]
rs6918630	0.98[ASN][1000 genomes]
rs6921328	0.98[ASN][1000 genomes]
rs6939652	0.98[ASN][1000 genomes]
rs71565102	0.83[EUR][1000 genomes]
rs71566904	0.83[EUR][1000 genomes]
rs71566906	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs71566907	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs71566908	0.95[ASN][1000 genomes]
rs71566924	0.98[ASN][1000 genomes]
rs71566925	0.95[ASN][1000 genomes]
rs73465800	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73468242	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs73748841	0.98[ASN][1000 genomes]
rs73748847	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs946484	0.94[ASN][1000 genomes]
rs997835	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs998078	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531333	chr6:81042427-81836484	Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
2	nsv1019670	chr6:81086504-81569984	ZNF genes & repeats Enhancers Active TSS Weak transcription Bivalent Enhancer Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
3	nsv886315	chr6:81352515-81946866	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv886316	chr6:81390313-81554464	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv886317	chr6:81428336-81536597	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv886318	chr6:81447367-81769538	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:81482200-81482800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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