Variant report

Variant	rs16892486
Chromosome Location	chr8:110109433-110109434
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 109 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:107)

rs_ID	r²[population]
rs10086023	0.90[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs10088496	0.81[ASN][1000 genomes]
rs10089544	0.81[ASN][1000 genomes]
rs10098145	0.99[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs10101048	0.81[ASN][1000 genomes]
rs10101050	0.81[ASN][1000 genomes]
rs10101189	0.81[ASN][1000 genomes]
rs10101520	0.81[ASN][1000 genomes]
rs10505126	0.84[ASN][1000 genomes]
rs10955505	0.84[ASN][1000 genomes]
rs10955508	0.81[ASN][1000 genomes]
rs10955510	0.81[ASN][1000 genomes]
rs10955512	0.81[ASN][1000 genomes]
rs11775991	0.81[ASN][1000 genomes]
rs11778370	0.87[CHB][hapmap];0.84[CHD][hapmap];0.91[JPT][hapmap];0.84[ASN][1000 genomes]
rs11785243	0.81[ASN][1000 genomes]
rs11785269	0.81[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.82[YRI][hapmap];0.88[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs11985765	0.82[ASN][1000 genomes]
rs11986161	0.81[ASN][1000 genomes]
rs11992816	0.82[ASN][1000 genomes]
rs11994164	0.81[ASN][1000 genomes]
rs11994227	0.81[ASN][1000 genomes]
rs11997974	0.81[ASN][1000 genomes]
rs12542811	0.81[ASN][1000 genomes]
rs12542959	0.81[ASN][1000 genomes]
rs12543246	0.83[ASN][1000 genomes]
rs12544150	0.81[ASN][1000 genomes]
rs12544462	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12544503	0.81[ASN][1000 genomes]
rs12549347	0.81[ASN][1000 genomes]
rs12549397	0.81[ASN][1000 genomes]
rs12550383	0.81[ASN][1000 genomes]
rs12675753	0.81[ASN][1000 genomes]
rs12679311	0.97[ASN][1000 genomes]
rs12680028	0.82[ASN][1000 genomes]
rs13254233	0.96[ASN][1000 genomes]
rs13265151	0.81[ASN][1000 genomes]
rs13269597	0.99[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs13282488	0.81[ASN][1000 genomes]
rs1380096	0.86[CHB][hapmap];0.83[JPT][hapmap]
rs1380097	0.86[CHB][hapmap];0.90[CHD][hapmap];0.83[JPT][hapmap]
rs1458915	0.86[CHB][hapmap];0.83[JPT][hapmap]
rs1458916	0.86[CHB][hapmap];0.83[JPT][hapmap]
rs1458917	0.86[CHB][hapmap];0.83[JPT][hapmap]
rs1548082	0.86[CHB][hapmap];0.88[CHD][hapmap];0.82[JPT][hapmap]
rs1548083	0.86[CHB][hapmap];0.91[CHD][hapmap];0.83[JPT][hapmap]
rs16892496	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.88[MEX][hapmap];0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs28413119	0.81[ASN][1000 genomes]
rs28437828	0.81[ASN][1000 genomes]
rs2926198	0.86[CHB][hapmap];0.83[JPT][hapmap]
rs2980603	0.86[CHB][hapmap];0.83[JPT][hapmap]
rs2980618	0.88[CHD][hapmap];0.86[JPT][hapmap]
rs34092076	0.99[AFR][1000 genomes];0.89[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs35978837	0.81[ASN][1000 genomes]
rs3925087	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs3925088	0.84[ASN][1000 genomes]
rs4129682	0.87[CHB][hapmap];0.84[CHD][hapmap];0.95[JPT][hapmap];0.85[ASN][1000 genomes]
rs4130682	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs4236801	0.92[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];1.00[LWK][hapmap];0.96[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.91[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4236802	0.84[ASN][1000 genomes]
rs4301422	0.87[CHB][hapmap];0.91[JPT][hapmap];0.84[ASN][1000 genomes]
rs4342559	0.87[CHB][hapmap];0.91[JPT][hapmap];0.84[ASN][1000 genomes]
rs4358779	0.81[ASN][1000 genomes]
rs4386952	0.86[CHB][hapmap];0.86[CHD][hapmap]
rs4389899	0.81[ASN][1000 genomes]
rs4428648	0.81[ASN][1000 genomes]
rs4439099	0.81[ASN][1000 genomes]
rs4442117	0.81[ASN][1000 genomes]
rs4443632	0.81[ASN][1000 genomes]
rs4446710	1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[JPT][hapmap];0.98[ASN][1000 genomes]
rs4464939	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.97[AFR][1000 genomes];0.90[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs4529440	0.81[ASN][1000 genomes]
rs4546626	1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[JPT][hapmap];0.98[ASN][1000 genomes]
rs4645539	0.81[ASN][1000 genomes]
rs4734190	0.93[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs4734191	0.89[ASN][1000 genomes]
rs4734192	0.97[ASN][1000 genomes]
rs4734196	0.81[ASN][1000 genomes]
rs4734197	0.81[ASN][1000 genomes]
rs4734198	0.81[ASN][1000 genomes]
rs4735091	0.86[ASN][1000 genomes]
rs4735092	0.87[CHB][hapmap];0.95[JPT][hapmap]
rs4735093	0.87[CHB][hapmap];0.84[CHD][hapmap];0.95[JPT][hapmap]
rs4735094	0.87[CHB][hapmap];0.91[JPT][hapmap];0.84[ASN][1000 genomes]
rs4735095	0.89[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs4735096	0.92[ASN][1000 genomes]
rs4735097	0.87[ASN][1000 genomes]
rs4735098	0.87[ASN][1000 genomes]
rs4735108	0.81[ASN][1000 genomes]
rs4735109	0.81[ASN][1000 genomes]
rs4735110	0.81[ASN][1000 genomes]
rs56896876	0.81[ASN][1000 genomes]
rs5778	0.98[ASN][1000 genomes]
rs6983376	0.81[ASN][1000 genomes]
rs6990140	0.81[ASN][1000 genomes]
rs6994788	0.81[ASN][1000 genomes]
rs7010380	0.81[ASN][1000 genomes]
rs7821463	0.86[ASN][1000 genomes]
rs7823804	1.00[CHB][hapmap];0.95[JPT][hapmap];0.98[ASN][1000 genomes]
rs7825689	0.81[ASN][1000 genomes]
rs7828207	0.80[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.90[YRI][hapmap];0.99[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs7829544	0.87[ASN][1000 genomes]
rs7832552	0.92[ASW][hapmap];0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.83[MEX][hapmap];0.91[YRI][hapmap];1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs7840000	0.86[ASN][1000 genomes]
rs7844643	1.00[CHB][hapmap];0.95[JPT][hapmap];0.98[ASN][1000 genomes]
rs7845815	0.81[ASN][1000 genomes]
rs9297421	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022273	chr8:110026712-110146600	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv539715	chr8:110026712-110146600	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs16892486	PKHD1L1	cis	lymphoblastoid	seeQTL
rs16892486	NUDCD1	cis	cerebellum	SCAN
rs16892486	PKHD1L1	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:110108800-110111800	Weak transcription	Fetal Kidney	kidney

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