Variant report

Variant	rs16895451
Chromosome Location	chr6:164286407-164286408
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs1475208	0.83[EUR][1000 genomes]
rs16895454	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4709018	0.83[EUR][1000 genomes]
rs4709759	0.83[EUR][1000 genomes]
rs56095211	0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs60028618	0.83[EUR][1000 genomes]
rs67410945	0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs67424524	0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs67478587	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6902564	0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6907455	0.99[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6908861	0.83[EUR][1000 genomes]
rs6916946	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6938128	0.98[ASN][1000 genomes]
rs7759591	0.97[ASN][1000 genomes]
rs9365609	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018860	chr6:163939347-164532579	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv538526	chr6:163939347-164532579	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
3	nsv1026707	chr6:164188210-164749206	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv538527	chr6:164188210-164749206	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
5	esv1798922	chr6:164257563-164298780	Enhancers Active TSS Flanking Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:164275600-164287000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr6:164282000-164287000	Weak transcription	Right Ventricle	heart
3	chr6:164282000-164287200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr6:164283400-164287200	Weak transcription	Spleen	Spleen
5	chr6:164284200-164288600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr6:164284800-164287400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr6:164285000-164287200	Weak transcription	HUES48 Cell Line	embryonic stem cell
8	chr6:164285000-164287400	Weak transcription	H9 Cell Line	embryonic stem cell
9	chr6:164285000-164289000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr6:164285000-164293600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
11	chr6:164285400-164287200	Weak transcription	H1 Cell Line	embryonic stem cell
12	chr6:164285400-164287200	Weak transcription	HUES6 Cell Line	embryonic stem cell
13	chr6:164285400-164287400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
14	chr6:164286000-164287200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links