Variant report

Variant	rs16897031
Chromosome Location	chr8:99483391-99483392
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:24)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:24 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr8:99342126..99342715-chr8:99483301..99483893,2	MCF-7	breast:
2	chr8:99351310..99353495-chr8:99481497..99483902,2	MCF-7	breast:
3	chr8:99307476..99309905-chr8:99483223..99485550,2	MCF-7	breast:
4	chr8:99175715..99177709-chr8:99483018..99484451,14	MCF-7	breast:
5	chr8:99370425..99370942-chr8:99483139..99483956,2	K562	blood:
6	chr8:99339898..99346485-chr8:99480859..99484990,7	MCF-7	breast:
7	chr8:99370393..99370939-chr8:99483098..99483860,2	MCF-7	breast:
8	chr8:99181961..99182936-chr8:99483152..99483998,5	MCF-7	breast:
9	chr8:99394272..99396265-chr8:99482419..99484107,12	MCF-7	breast:
10	chr8:99410505..99411485-chr8:99483128..99483953,2	MCF-7	breast:
11	chr8:99471920..99474207-chr8:99482647..99485116,2	MCF-7	breast:
12	chr8:99474916..99476763-chr8:99482143..99484573,2	MCF-7	breast:
13	chr8:99181973..99182906-chr8:99483012..99483962,4	K562	blood:
14	chr8:99369995..99370981-chr8:99483040..99484080,8	MCF-7	breast:
15	chr8:99175652..99177046-chr8:99483003..99483808,7	K562	blood:
16	chr8:99181984..99182888-chr8:99483123..99483652,2	MCF-7	breast:
17	chr8:99395255..99395975-chr8:99483103..99483980,4	MCF-7	breast:
18	chr8:99481593..99484303-chr8:99484870..99487403,2	K562	blood:
19	chr8:99341008..99341898-chr8:99483050..99483965,5	MCF-7	breast:
20	chr8:99476761..99480533-chr8:99480952..99484066,4	MCF-7	breast:
21	chr8:99340851..99341472-chr8:99482889..99483740,4	MCF-7	breast:
22	chr8:99304142..99307094-chr8:99482404..99484107,2	MCF-7	breast:
23	chr8:99384471..99385031-chr8:99482985..99483963,2	MCF-7	breast:
24	chr8:99176800..99177650-chr8:99482717..99483975,5	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000207378	Chromatin interaction
ENSG00000104361	Chromatin interaction

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs11986338	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4236850	0.81[CHB][hapmap]
rs4236852	0.87[CHB][hapmap];0.89[JPT][hapmap]
rs4734409	0.82[AFR][1000 genomes];0.90[AMR][1000 genomes];0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4735562	0.81[CHB][hapmap]
rs6468637	0.81[CHB][hapmap]
rs6987962	0.81[CHB][hapmap]
rs7008395	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7011216	0.81[CHB][hapmap];0.94[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.82[TSI][hapmap];1.00[YRI][hapmap]
rs7815957	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7826857	0.81[CHB][hapmap];0.89[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1027362	chr8:99469281-99715845	Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv539689	chr8:99469281-99715845	Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:99461800-99525000	Weak transcription	Psoas Muscle	Psoas
2	chr8:99477400-99485600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr8:99477400-99491400	Weak transcription	Fetal Muscle Trunk	muscle
4	chr8:99479600-99488600	Weak transcription	HUVEC	blood vessel
5	chr8:99479600-99490000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr8:99479600-99504600	Weak transcription	NHEK	skin
7	chr8:99479800-99502800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr8:99480200-99490400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr8:99480600-99490200	Weak transcription	NHLF	lung
10	chr8:99482000-99483400	Enhancers	Fetal Heart	heart
11	chr8:99482200-99483400	Enhancers	Osteobl	bone
12	chr8:99482200-99486400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr8:99482400-99483400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr8:99482400-99483800	Enhancers	Muscle Satellite Cultured Cells	--
15	chr8:99482400-99485000	Enhancers	NHDF-Ad	bronchial
16	chr8:99482400-99485200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr8:99482600-99483400	Enhancers	GM12878-XiMat	blood
18	chr8:99483000-99483400	Enhancers	HSMMtube	muscle
19	chr8:99483200-99483400	Enhancers	Fetal Lung	lung
20	chr8:99483200-99483400	Enhancers	Ovary	ovary
21	chr8:99483200-99484800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
22	chr8:99483200-99490000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin

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