Variant report

Variant	rs16897069
Chromosome Location	chr8:99554956-99554957
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:99542296..99548423-chr8:99550336..99556395,6	K562	blood:
2	chr8:99545068..99548423-chr8:99550336..99555475,4	K562	blood:
3	chr8:99548557..99552364-chr8:99553180..99556021,3	MCF-7	breast:
4	chr8:99548500..99551679-chr8:99552322..99555998,3	K562	blood:
5	chr8:23385716..23387742-chr8:99554566..99556123,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000147454	Chromatin interaction

Extended variants
information (count: 65 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:59)

rs_ID	r²[population]
rs10282835	1.00[ASN][1000 genomes]
rs10504986	1.00[ASN][1000 genomes]
rs11785588	1.00[ASN][1000 genomes]
rs12386830	1.00[ASN][1000 genomes]
rs13277523	1.00[ASN][1000 genomes]
rs16896995	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16897028	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16897050	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16897058	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16897111	1.00[ASN][1000 genomes]
rs28621642	1.00[ASN][1000 genomes]
rs34018826	1.00[ASN][1000 genomes]
rs4554439	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4574821	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4615538	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55793219	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55807423	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55921088	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55947965	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56099380	1.00[ASN][1000 genomes]
rs56185259	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56246659	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56290864	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56356780	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6982282	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6982285	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72666612	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72666616	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72666618	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72666619	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72666623	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72666624	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72666625	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72666629	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72666633	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72666638	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72666642	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72666643	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72666649	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72666652	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72666655	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72666661	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72666665	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72666666	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72666673	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72666676	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72666678	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72666680	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72666684	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72666685	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72666688	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72666689	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72666690	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72666699	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72668403	1.00[ASN][1000 genomes]
rs73699303	1.00[ASN][1000 genomes]
rs7835203	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7839115	1.00[ASN][1000 genomes]
rs7842869	0.91[AFR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1027362	chr8:99469281-99715845	Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv539689	chr8:99469281-99715845	Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv891218	chr8:99507313-99906221	Weak transcription Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
4	nsv891219	chr8:99526819-99643487	Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
5	nsv611808	chr8:99544765-99591736	Strong transcription Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Genic enhancers Active TSS	TF binding region Chromatin interactive region	7 gene(s)	inside rSNPs	diseases
6	nsv1030498	chr8:99545493-99607093	Weak transcription Strong transcription ZNF genes & repeats Enhancers Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:74 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:99500400-99558800	Weak transcription	Aorta	Aorta
2	chr8:99525800-99576400	Weak transcription	Pancreas	Pancrea
3	chr8:99531000-99569600	Weak transcription	HMEC	breast
4	chr8:99531200-99561800	Weak transcription	Sigmoid Colon	Sigmoid Colon
5	chr8:99531400-99586400	Weak transcription	HSMM	muscle
6	chr8:99531600-99561800	Weak transcription	Esophagus	oesophagus
7	chr8:99533400-99566400	Weak transcription	NHLF	lung
8	chr8:99534600-99567200	Weak transcription	A549	lung
9	chr8:99535400-99571600	Weak transcription	Gastric	stomach
10	chr8:99543000-99566800	Weak transcription	Placenta Amnion	Placenta Amnion
11	chr8:99543800-99555000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
12	chr8:99544000-99559000	Weak transcription	Skeletal Muscle Male	skeletal muscle
13	chr8:99544000-99560800	Weak transcription	Cortex derived primary cultured neurospheres	brain
14	chr8:99544000-99566800	Weak transcription	Brain Substantia Nigra	brain
15	chr8:99544200-99558800	Weak transcription	Rectal Mucosa Donor 31	rectum
16	chr8:99544200-99559400	Weak transcription	Rectal Mucosa Donor 29	rectum
17	chr8:99544600-99556000	Weak transcription	Left Ventricle	heart
18	chr8:99544600-99560000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
19	chr8:99544600-99587000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
20	chr8:99546000-99571600	Weak transcription	Fetal Intestine Small	intestine
21	chr8:99546400-99557000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr8:99546600-99555600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
23	chr8:99546600-99576400	Weak transcription	Primary hematopoietic stem cells	blood
24	chr8:99548400-99560800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
25	chr8:99548600-99557400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
26	chr8:99548600-99558800	Weak transcription	HSMMtube	muscle
27	chr8:99548600-99569800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
28	chr8:99548800-99563400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
29	chr8:99549600-99557400	Weak transcription	Osteobl	bone
30	chr8:99549800-99568200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
31	chr8:99550000-99557400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
32	chr8:99550000-99558200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
33	chr8:99550800-99560200	Weak transcription	Right Ventricle	heart
34	chr8:99551000-99557800	Weak transcription	Muscle Satellite Cultured Cells	--
35	chr8:99551200-99558800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
36	chr8:99551200-99559400	Weak transcription	Small Intestine	intestine
37	chr8:99551200-99560400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
38	chr8:99551200-99561800	Weak transcription	Brain Angular Gyrus	brain
39	chr8:99551400-99566000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
40	chr8:99551600-99557000	Weak transcription	Colon Smooth Muscle	Colon
41	chr8:99551600-99557200	Weak transcription	NHDF-Ad	bronchial
42	chr8:99551800-99557400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
43	chr8:99551800-99562000	Weak transcription	Rectal Smooth Muscle	rectum
44	chr8:99552000-99572600	Weak transcription	Brain Hippocampus Middle	brain
45	chr8:99552200-99555600	Strong transcription	Fetal Muscle Leg	muscle
46	chr8:99552200-99556200	Strong transcription	Fetal Muscle Trunk	muscle
47	chr8:99552400-99555600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
48	chr8:99552600-99555000	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
49	chr8:99552600-99559800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
50	chr8:99552800-99559000	Weak transcription	GM12878-XiMat	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links