Variant report

Variant	rs16897368
Chromosome Location	chr8:100473351-100473352
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs1003165	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1003166	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12114957	1.00[AMR][1000 genomes]
rs16897273	1.00[ASW][hapmap];0.94[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs16897309	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs16897313	1.00[AMR][1000 genomes]
rs16897320	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16897335	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16897352	0.89[LWK][hapmap];0.84[MKK][hapmap];1.00[AMR][1000 genomes]
rs16897394	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16897397	1.00[AMR][1000 genomes]
rs16897400	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16897424	1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16897438	1.00[YRI][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16897485	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16897496	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16897548	1.00[AMR][1000 genomes]
rs16897555	1.00[AMR][1000 genomes]
rs1817641	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28377732	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs34941871	1.00[AMR][1000 genomes]
rs35817418	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs41391644	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56668101	1.00[AMR][1000 genomes]
rs56898968	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57070412	1.00[AMR][1000 genomes]
rs57350235	1.00[AMR][1000 genomes]
rs57879149	1.00[AMR][1000 genomes]
rs59178100	1.00[AMR][1000 genomes]
rs59980540	1.00[AMR][1000 genomes]
rs60932963	1.00[AMR][1000 genomes]
rs61199835	1.00[AMR][1000 genomes]
rs61380879	1.00[AMR][1000 genomes]
rs61387340	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:18 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv524617	chr8:100032844-100717925	ZNF genes & repeats Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
2	nsv1020614	chr8:100046692-100594092	ZNF genes & repeats Weak transcription Strong transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
3	nsv1026442	chr8:100075230-100561451	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Strong transcription Bivalent/Poised TSS Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
4	nsv539694	chr8:100075230-100561451	Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
5	nsv1022914	chr8:100190356-100720313	Weak transcription Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
6	nsv539695	chr8:100190356-100720313	Weak transcription Strong transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
7	nsv1031100	chr8:100290887-100508952	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
8	nsv539697	chr8:100290887-100508952	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
9	nsv891226	chr8:100295634-100708595	Strong transcription Enhancers Weak transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	15 gene(s)	inside rSNPs	diseases
10	nsv891227	chr8:100295634-100743556	Weak transcription ZNF genes & repeats Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	15 gene(s)	inside rSNPs	diseases
11	nsv1019256	chr8:100336249-100852803	Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	18 gene(s)	inside rSNPs	diseases
12	nsv539698	chr8:100336249-100852803	Strong transcription Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	18 gene(s)	inside rSNPs	diseases
13	nsv1015966	chr8:100387076-100481107	Enhancers Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
14	esv2758167	chr8:100404151-100838624	Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	15 gene(s)	inside rSNPs	diseases
15	esv2759633	chr8:100404151-100838624	Weak transcription Strong transcription Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	15 gene(s)	inside rSNPs	diseases
16	nsv933879	chr8:100417371-100622310	Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	9 gene(s)	inside rSNPs	diseases
17	nsv1029616	chr8:100442135-100796643	Strong transcription Weak transcription Enhancers ZNF genes & repeats Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	11 gene(s)	inside rSNPs	diseases
18	nsv933504	chr8:100443818-100493791	Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:65 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:100399800-100498400	Weak transcription	Thymus	Thymus
2	chr8:100443800-100493800	Weak transcription	Pancreas	Pancrea
3	chr8:100446200-100500400	Weak transcription	Fetal Thymus	thymus
4	chr8:100468000-100484200	Weak transcription	Skeletal Muscle Male	skeletal muscle
5	chr8:100471200-100474000	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr8:100471200-100474200	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
7	chr8:100471200-100474400	ZNF genes & repeats	Primary T cells from cord blood	blood
8	chr8:100471200-100475200	ZNF genes & repeats	Dnd41	blood
9	chr8:100471200-100475400	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr8:100471400-100473400	ZNF genes & repeats	Rectal Mucosa Donor 31	rectum
11	chr8:100471400-100473600	ZNF genes & repeats	Liver	Liver
12	chr8:100471400-100473800	ZNF genes & repeats	Adipose Nuclei	Adipose
13	chr8:100471400-100474000	ZNF genes & repeats	Primary T helper memory cells from peripheral blood 1	blood
14	chr8:100471400-100474000	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
15	chr8:100471400-100474800	ZNF genes & repeats	Primary B cells from peripheral blood	blood
16	chr8:100471400-100475600	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr8:100471400-100500800	Weak transcription	Rectal Smooth Muscle	rectum
18	chr8:100471600-100473600	ZNF genes & repeats	Primary T cells fromperipheralblood	blood
19	chr8:100471600-100473600	ZNF genes & repeats	NHDF-Ad	bronchial
20	chr8:100471600-100474200	ZNF genes & repeats	Primary T helper cells PMA-I stimulated	--
21	chr8:100471600-100474600	ZNF genes & repeats	Primary B cells from cord blood	blood
22	chr8:100471800-100473400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
23	chr8:100471800-100479000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
24	chr8:100472000-100474200	ZNF genes & repeats	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
25	chr8:100472000-100475400	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
26	chr8:100472200-100474000	ZNF genes & repeats	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
27	chr8:100472200-100474200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
28	chr8:100472400-100473400	ZNF genes & repeats	Primary T helper cells fromperipheralblood	blood
29	chr8:100472600-100473400	ZNF genes & repeats	Muscle Satellite Cultured Cells	--
30	chr8:100472600-100473400	ZNF genes & repeats	Osteobl	bone
31	chr8:100472600-100473600	ZNF genes & repeats	Primary hematopoietic stem cells	blood
32	chr8:100472600-100474000	Strong transcription	Primary monocytes fromperipheralblood	blood
33	chr8:100472600-100474400	ZNF genes & repeats	Primary T regulatory cells fromperipheralblood	blood
34	chr8:100472600-100474400	ZNF genes & repeats	Fetal Intestine Large	intestine
35	chr8:100472800-100473400	ZNF genes & repeats	Brain Inferior Temporal Lobe	brain
36	chr8:100472800-100473400	ZNF genes & repeats	Brain Substantia Nigra	brain
37	chr8:100472800-100473400	ZNF genes & repeats	Fetal Heart	heart
38	chr8:100472800-100473400	ZNF genes & repeats	Psoas Muscle	Psoas
39	chr8:100472800-100473600	ZNF genes & repeats	Primary T helper naive cells from peripheral blood	blood
40	chr8:100472800-100473600	ZNF genes & repeats	Primary T cells effector/memory enriched fromperipheralblood	blood
41	chr8:100472800-100473600	ZNF genes & repeats	Brain Hippocampus Middle	brain
42	chr8:100472800-100473600	ZNF genes & repeats	Rectal Mucosa Donor 29	rectum
43	chr8:100472800-100473600	ZNF genes & repeats	HSMM	muscle
44	chr8:100472800-100473600	ZNF genes & repeats	NH-A	brain
45	chr8:100472800-100473800	ZNF genes & repeats	Skeletal Muscle Female	skeletal muscle
46	chr8:100472800-100474000	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
47	chr8:100472800-100474000	ZNF genes & repeats	Duodenum Mucosa	Duodenum
48	chr8:100472800-100474000	ZNF genes & repeats	Fetal Lung	lung
49	chr8:100472800-100474200	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
50	chr8:100472800-100474400	ZNF genes & repeats	GM12878-XiMat	blood

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