Variant report

Variant	rs16897581
Chromosome Location	chr8:100721379-100721380
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:100719530..100723124-chr8:100724198..100728013,4	K562	blood:
2	chr8:100715387..100717513-chr8:100719961..100722930,2	K562	blood:
3	chr8:100719725..100721462-chr8:100723554..100725582,2	K562	blood:

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10504992	1.00[CHB][hapmap];0.91[CHD][hapmap]
rs1449786	0.89[ASN][1000 genomes]
rs16892266	0.91[YRI][hapmap]
rs16897410	1.00[CHB][hapmap];0.91[CHD][hapmap]
rs16897424	0.83[YRI][hapmap]
rs16897438	0.83[YRI][hapmap]
rs16897439	1.00[CHB][hapmap];0.91[CHD][hapmap]
rs16897573	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.93[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs16897612	0.83[YRI][hapmap]
rs16897621	0.91[YRI][hapmap]
rs16897708	1.00[CHB][hapmap]
rs16897713	1.00[CHB][hapmap]
rs16897718	0.91[YRI][hapmap]
rs16897726	0.89[ASW][hapmap];0.90[CHB][hapmap];0.91[CHD][hapmap];0.89[LWK][hapmap];0.91[YRI][hapmap]
rs16897728	1.00[CHB][hapmap];0.91[CHD][hapmap]
rs1979115	1.00[CHB][hapmap];0.82[LWK][hapmap];0.91[YRI][hapmap]
rs1979116	0.91[YRI][hapmap]
rs1979117	1.00[CHB][hapmap];0.91[CHD][hapmap]
rs2067529	1.00[CHB][hapmap];0.91[CHD][hapmap]
rs2084554	0.82[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs2084555	0.86[AFR][1000 genomes]
rs2100220	0.89[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs4734435	0.92[ASN][1000 genomes]
rs4734436	0.89[ASN][1000 genomes]
rs4734437	1.00[CHB][hapmap];0.91[YRI][hapmap];0.81[AFR][1000 genomes]
rs4735632	0.92[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs4735633	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4735634	0.92[ASN][1000 genomes]
rs4735635	0.92[ASN][1000 genomes]
rs4735636	0.81[ASN][1000 genomes]
rs4735639	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4735642	0.81[AFR][1000 genomes]
rs4735646	1.00[CHB][hapmap]
rs61753724	0.92[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs7832916	1.00[CHB][hapmap];0.91[CHD][hapmap]
rs7833256	1.00[CHB][hapmap];0.91[CHD][hapmap]
rs7833870	1.00[CHB][hapmap];0.91[CHD][hapmap]
rs896008	0.91[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv891227	chr8:100295634-100743556	Weak transcription ZNF genes & repeats Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	15 gene(s)	inside rSNPs	diseases
2	nsv1019256	chr8:100336249-100852803	Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	18 gene(s)	inside rSNPs	diseases
3	nsv539698	chr8:100336249-100852803	Strong transcription Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	18 gene(s)	inside rSNPs	diseases
4	esv2758167	chr8:100404151-100838624	Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	15 gene(s)	inside rSNPs	diseases
5	esv2759633	chr8:100404151-100838624	Weak transcription Strong transcription Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	15 gene(s)	inside rSNPs	diseases
6	nsv1029616	chr8:100442135-100796643	Strong transcription Weak transcription Enhancers ZNF genes & repeats Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	11 gene(s)	inside rSNPs	diseases
7	nsv831408	chr8:100523523-100721507	Weak transcription Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:100687000-100739800	Weak transcription	Rectal Mucosa Donor 31	rectum
2	chr8:100699800-100731600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
3	chr8:100699800-100733200	Weak transcription	Primary B cells from peripheral blood	blood
4	chr8:100700400-100733800	Weak transcription	Primary hematopoietic stem cells	blood
5	chr8:100707600-100732400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
6	chr8:100708400-100725600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr8:100710200-100739800	Weak transcription	Psoas Muscle	Psoas
8	chr8:100710200-100785000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr8:100712800-100729400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr8:100713000-100732800	Weak transcription	Primary neutrophils fromperipheralblood	blood
11	chr8:100713000-100733200	Weak transcription	Left Ventricle	heart
12	chr8:100713200-100732800	Weak transcription	Primary monocytes fromperipheralblood	blood
13	chr8:100713200-100746800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
14	chr8:100713400-100729400	Weak transcription	Monocytes-CD14+_RO01746	blood
15	chr8:100715000-100725600	Weak transcription	HSMMtube	muscle
16	chr8:100715200-100727400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr8:100715200-100737400	Weak transcription	Fetal Intestine Large	intestine
18	chr8:100716400-100739000	Weak transcription	Fetal Kidney	kidney
19	chr8:100716800-100726800	Weak transcription	Thymus	Thymus
20	chr8:100716800-100744400	Weak transcription	Aorta	Aorta
21	chr8:100717400-100736600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
22	chr8:100717600-100727000	Weak transcription	Duodenum Smooth Muscle	Duodenum
23	chr8:100718200-100733200	Weak transcription	Rectal Mucosa Donor 29	rectum
24	chr8:100718600-100732600	Weak transcription	Ovary	ovary
25	chr8:100718800-100724000	Weak transcription	Placenta Amnion	Placenta Amnion
26	chr8:100718800-100726600	Weak transcription	Primary T cells from cord blood	blood
27	chr8:100719200-100726800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
28	chr8:100719600-100726600	Weak transcription	Primary T helper cells fromperipheralblood	blood
29	chr8:100719600-100732600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
30	chr8:100719600-100750600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
31	chr8:100720000-100721600	Strong transcription	Primary B cells from cord blood	blood
32	chr8:100720000-100737000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
33	chr8:100720200-100721400	Weak transcription	Colon Smooth Muscle	Colon
34	chr8:100721200-100721600	Enhancers	Rectal Smooth Muscle	rectum
35	chr8:100721200-100722200	Enhancers	Pancreatic Islets	Pancreatic Islet

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links