Variant report

Variant	rs16897685
Chromosome Location	chr8:100785911-100785912
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:100785202..100786887-chr8:100791527..100794268,2	MCF-7	breast:
2	chr8:100724026..100725621-chr8:100784325..100786772,2	K562	blood:

Extended variants
information (count: 82 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:76)

rs_ID	r²[population]
rs10504992	0.88[EUR][1000 genomes]
rs11984855	0.82[EUR][1000 genomes]
rs11987013	0.88[EUR][1000 genomes]
rs11987034	0.88[EUR][1000 genomes]
rs11989649	0.85[EUR][1000 genomes]
rs11992778	0.88[EUR][1000 genomes]
rs11994623	0.88[EUR][1000 genomes]
rs11996543	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1349244	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1349245	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1449786	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1449790	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1449791	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1552443	0.88[EUR][1000 genomes]
rs16897439	0.88[EUR][1000 genomes]
rs16897488	0.88[EUR][1000 genomes]
rs16897504	0.85[EUR][1000 genomes]
rs16897573	1.00[CHB][hapmap];0.91[CHD][hapmap]
rs16897656	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16897662	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16897666	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16897701	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16897702	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16897708	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16897713	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16897726	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16897728	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17331148	1.00[EUR][1000 genomes]
rs1979115	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1979117	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2067529	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.85[EUR][1000 genomes]
rs2084554	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2084555	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2100220	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2122341	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2167101	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28372694	0.82[EUR][1000 genomes]
rs2871953	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs28847009	0.88[EUR][1000 genomes]
rs4288349	0.88[EUR][1000 genomes]
rs4342557	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4531021	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4734434	0.88[EUR][1000 genomes]
rs4734435	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4734436	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4734437	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4734438	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4734439	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4735616	0.88[EUR][1000 genomes]
rs4735622	0.88[EUR][1000 genomes]
rs4735623	0.88[EUR][1000 genomes]
rs4735624	0.88[EUR][1000 genomes]
rs4735631	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4735632	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4735634	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4735635	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4735636	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4735637	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4735638	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4735639	0.90[ASN][1000 genomes]
rs4735642	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4735644	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4735645	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4735646	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56912854	1.00[AMR][1000 genomes]
rs57753543	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61753724	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7003135	0.97[EUR][1000 genomes]
rs73271394	0.94[EUR][1000 genomes]
rs73273207	0.97[EUR][1000 genomes]
rs7387462	0.88[EUR][1000 genomes]
rs7832916	0.88[EUR][1000 genomes]
rs7833256	0.88[EUR][1000 genomes]
rs7833870	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7841162	0.82[EUR][1000 genomes]
rs921313	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1019256	chr8:100336249-100852803	Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	18 gene(s)	inside rSNPs	diseases
2	nsv539698	chr8:100336249-100852803	Strong transcription Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	18 gene(s)	inside rSNPs	diseases
3	esv2758167	chr8:100404151-100838624	Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	15 gene(s)	inside rSNPs	diseases
4	esv2759633	chr8:100404151-100838624	Weak transcription Strong transcription Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	15 gene(s)	inside rSNPs	diseases
5	nsv1029616	chr8:100442135-100796643	Strong transcription Weak transcription Enhancers ZNF genes & repeats Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	11 gene(s)	inside rSNPs	diseases
6	nsv1033944	chr8:100737321-100916345	Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Enhancers Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs16897685	PLAUR	trans	lymphoblastoid	seeQTL

Chromatin state (count:92 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:100734600-100796600	Weak transcription	Pancreas	Pancrea
2	chr8:100761800-100787200	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr8:100763600-100796600	Weak transcription	HSMMtube	muscle
4	chr8:100766200-100798000	Weak transcription	Primary T helper cells PMA-I stimulated	--
5	chr8:100766200-100815600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
6	chr8:100767600-100787200	Weak transcription	Fetal Thymus	thymus
7	chr8:100769000-100798200	Weak transcription	Psoas Muscle	Psoas
8	chr8:100769600-100791000	Weak transcription	Fetal Kidney	kidney
9	chr8:100770000-100787000	Weak transcription	Adipose Nuclei	Adipose
10	chr8:100771400-100786400	Weak transcription	GM12878-XiMat	blood
11	chr8:100772000-100787400	Weak transcription	Fetal Intestine Small	intestine
12	chr8:100772000-100798000	Weak transcription	Rectal Smooth Muscle	rectum
13	chr8:100772400-100824400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
14	chr8:100772600-100791000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr8:100775000-100822400	Weak transcription	Duodenum Mucosa	Duodenum
16	chr8:100776400-100790600	Weak transcription	Primary T cells fromperipheralblood	blood
17	chr8:100776600-100805800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
18	chr8:100777600-100807800	Weak transcription	Skeletal Muscle Male	skeletal muscle
19	chr8:100777600-100809600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
20	chr8:100777800-100787000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
21	chr8:100777800-100791000	Weak transcription	Brain Substantia Nigra	brain
22	chr8:100777800-100807200	Weak transcription	Skeletal Muscle Female	skeletal muscle
23	chr8:100778000-100806400	Weak transcription	Brain Hippocampus Middle	brain
24	chr8:100778400-100787600	Weak transcription	Esophagus	oesophagus
25	chr8:100778400-100857800	Weak transcription	Spleen	Spleen
26	chr8:100778600-100796600	Weak transcription	Rectal Mucosa Donor 29	rectum
27	chr8:100779400-100791000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
28	chr8:100779400-100791000	Weak transcription	Brain Anterior Caudate	brain
29	chr8:100779800-100801800	Weak transcription	Fetal Brain Male	brain
30	chr8:100780000-100795600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
31	chr8:100780200-100796600	Weak transcription	Fetal Muscle Trunk	muscle
32	chr8:100780400-100787000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
33	chr8:100780400-100787200	Weak transcription	Primary T cells from cord blood	blood
34	chr8:100780400-100787200	Weak transcription	Fetal Intestine Large	intestine
35	chr8:100780400-100789000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
36	chr8:100780400-100790800	Weak transcription	Left Ventricle	heart
37	chr8:100780400-100790800	Weak transcription	Monocytes-CD14+_RO01746	blood
38	chr8:100780400-100791000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
39	chr8:100780400-100796600	Weak transcription	Primary monocytes fromperipheralblood	blood
40	chr8:100780400-100799000	Weak transcription	Thymus	Thymus
41	chr8:100780400-100810200	Weak transcription	Aorta	Aorta
42	chr8:100780400-100810600	Weak transcription	Duodenum Smooth Muscle	Duodenum
43	chr8:100780400-100816400	Weak transcription	Lung	lung
44	chr8:100780600-100786800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
45	chr8:100780600-100787200	Weak transcription	Fetal Lung	lung
46	chr8:100780600-100790800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
47	chr8:100780600-100791000	Weak transcription	Primary neutrophils fromperipheralblood	blood
48	chr8:100780600-100799800	Weak transcription	Brain Cingulate Gyrus	brain
49	chr8:100780600-100801200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
50	chr8:100780600-100802800	Weak transcription	Dnd41	blood

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