Variant report

Variant	rs16900178
Chromosome Location	chr8:126024398-126024399
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:125550286..125552780-chr8:126023711..126026252,2	MCF-7	breast:
2	chr8:126023202..126026659-chr8:126034070..126037964,3	K562	blood:
3	chr8:126010374..126012680-chr8:126023206..126027775,5	MCF-7	breast:

Variant related genes	Relation type
ENSG00000253513	Chromatin interaction
ENSG00000147684	Chromatin interaction
ENSG00000104549	Chromatin interaction
ENSG00000147687	Chromatin interaction

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10093770	1.00[CEU][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10094264	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11542889	1.00[CEU][hapmap];0.98[EUR][1000 genomes]
rs11997328	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16900217	1.00[CEU][hapmap];0.95[EUR][1000 genomes]
rs2272682	1.00[CEU][hapmap]
rs2303530	1.00[CEU][hapmap]
rs28431161	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28600176	1.00[EUR][1000 genomes]
rs28803012	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs56005734	1.00[EUR][1000 genomes]
rs60909322	1.00[EUR][1000 genomes]
rs7007276	1.00[CEU][hapmap];0.95[EUR][1000 genomes]
rs73704519	0.95[EUR][1000 genomes]
rs73704523	1.00[EUR][1000 genomes]
rs73704526	1.00[EUR][1000 genomes]
rs73704529	0.88[EUR][1000 genomes]
rs9940	1.00[CEU][hapmap];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv891434	chr8:125630655-126324432	Strong transcription Enhancers Weak transcription Active TSS Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	80 gene(s)	inside rSNPs	diseases
2	nsv1030748	chr8:126012282-126137840	ZNF genes & repeats Enhancers Strong transcription Weak transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
3	nsv539743	chr8:126012282-126137840	Active TSS Strong transcription Weak transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:120 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:126011800-126034000	Weak transcription	Skeletal Muscle Female	skeletal muscle
2	chr8:126012400-126029200	Weak transcription	Rectal Smooth Muscle	rectum
3	chr8:126012600-126027000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
4	chr8:126012600-126029000	Weak transcription	Colonic Mucosa	Colon
5	chr8:126013200-126028200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
6	chr8:126013200-126029200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr8:126013400-126029200	Weak transcription	Lung	lung
8	chr8:126013400-126029200	Weak transcription	Spleen	Spleen
9	chr8:126013400-126029400	Weak transcription	Placenta Amnion	Placenta Amnion
10	chr8:126013400-126040400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
11	chr8:126013400-126042600	Weak transcription	Right Ventricle	heart
12	chr8:126013600-126028800	Weak transcription	Thymus	Thymus
13	chr8:126013600-126052200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
14	chr8:126013800-126029000	Weak transcription	Ovary	ovary
15	chr8:126014200-126026200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
16	chr8:126014200-126029200	Weak transcription	Fetal Intestine Small	intestine
17	chr8:126014400-126027000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
18	chr8:126014400-126029000	Weak transcription	Aorta	Aorta
19	chr8:126014400-126029000	Weak transcription	Fetal Stomach	stomach
20	chr8:126014400-126029200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
21	chr8:126014400-126029800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
22	chr8:126014400-126031400	Strong transcription	NHDF-Ad	bronchial
23	chr8:126014600-126044000	Weak transcription	Stomach Mucosa	stomach
24	chr8:126015000-126024400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
25	chr8:126015200-126026000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
26	chr8:126015400-126025400	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
27	chr8:126015400-126029400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
28	chr8:126015400-126036800	Strong transcription	H1 Cell Line	embryonic stem cell
29	chr8:126015400-126037400	Strong transcription	A549	lung
30	chr8:126015400-126037600	Strong transcription	HSMM	muscle
31	chr8:126015400-126098000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
32	chr8:126015600-126029000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
33	chr8:126015600-126029000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
34	chr8:126015600-126031400	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
35	chr8:126015600-126031600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
36	chr8:126015600-126037000	Strong transcription	HUES48 Cell Line	embryonic stem cell
37	chr8:126015600-126039000	Strong transcription	HUES64 Cell Line	embryonic stem cell
38	chr8:126015600-126041000	Strong transcription	Fetal Thymus	thymus
39	chr8:126015800-126037400	Strong transcription	iPS-20b Cell Line	embryonic stem cell
40	chr8:126016000-126026000	Strong transcription	Placenta	Placenta
41	chr8:126016000-126027000	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
42	chr8:126016000-126041400	Strong transcription	Liver	Liver
43	chr8:126016400-126036800	Strong transcription	K562	blood
44	chr8:126016600-126036400	Strong transcription	HUES6 Cell Line	embryonic stem cell
45	chr8:126017000-126035400	Weak transcription	Colon Smooth Muscle	Colon
46	chr8:126017200-126025200	Strong transcription	Primary B cells from cord blood	blood
47	chr8:126017200-126036800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
48	chr8:126017600-126025200	Strong transcription	H9 Cell Line	embryonic stem cell
49	chr8:126017600-126025200	Strong transcription	Duodenum Mucosa	Duodenum
50	chr8:126017600-126032400	Strong transcription	Fetal Muscle Leg	muscle

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