Variant report

Variant	rs16900221
Chromosome Location	chr8:126038452-126038453
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:126029769..126032617-chr8:126037247..126040729,3	MCF-7	breast:
2	chr8:126032820..126035325-chr8:126036016..126038466,2	MCF-7	breast:
3	chr8:126036207..126038970-chr8:126041820..126045600,5	MCF-7	breast:
4	chr8:126036415..126039009-chr8:126059941..126062119,2	MCF-7	breast:
5	chr8:126028822..126031408-chr8:126036412..126038864,2	MCF-7	breast:
6	chr8:126038176..126039711-chr8:126070696..126072979,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000104549	Chromatin interaction
ENSG00000164961	Chromatin interaction

Extended variants
information (count: 129 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:126)

rs_ID	r²[population]
rs1004350	0.85[CHB][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1004676	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10089455	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10089574	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10089792	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10092363	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10095627	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10105624	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10113495	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10505449	0.85[CHB][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10505450	0.85[CHB][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10505451	0.85[CHB][hapmap];1.00[JPT][hapmap];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11985488	0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11985490	0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11985491	0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11985518	0.85[CHB][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11986264	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11986339	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11988640	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11989471	0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11989475	0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11993043	0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11993478	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11993484	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11993487	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11996035	0.85[CHB][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11996796	0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11996868	0.85[CHB][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs16900175	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16900180	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16900215	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16900222	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16900228	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16900250	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16900266	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16900269	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16900307	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16900364	0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs16900368	0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs16900369	0.85[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1802526	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2009959	0.85[CHB][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2272682	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs2288311	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2293985	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2293987	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2303521	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2303524	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2303526	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2303527	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2303528	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2303529	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2303530	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs2384917	0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs28386832	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28394364	0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs28447527	0.85[ASN][1000 genomes]
rs28453073	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28465401	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28489055	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28498361	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28546275	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28610111	0.94[ASN][1000 genomes]
rs28612575	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28624116	0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs28633402	0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs28653090	0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs28685667	0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs28702720	0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs28714511	0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2891636	0.85[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2891655	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3736666	0.85[CHB][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3736667	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3763594	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3763595	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3763596	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3765213	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3765214	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3793445	0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3793446	0.85[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3815873	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3860841	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3860842	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4355790	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4421364	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4421365	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4425776	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4458896	0.85[CHB][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4570178	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4570179	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57162779	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57431630	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57701401	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61506267	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6470329	1.00[ASN][1000 genomes]
rs6470330	0.85[CHB][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6470331	0.85[CHB][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6470332	0.85[CHB][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6470333	0.85[CHB][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6470334	0.85[CHB][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6470335	0.85[CHB][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6651231	0.85[CHB][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6651232	1.00[JPT][hapmap];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6980470	0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6981141	0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6981156	0.85[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6981164	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6981781	0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6982708	1.00[JPT][hapmap];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6989548	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6997862	1.00[JPT][hapmap]
rs7002684	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7002783	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72497351	0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73704517	1.00[ASN][1000 genomes]
rs7465254	0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7812319	0.85[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7813244	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7817303	0.85[CHB][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7831848	0.82[CHB][hapmap];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7832481	0.85[CHB][hapmap];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7844453	1.00[JPT][hapmap]
rs9297710	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9693702	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9792114	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv891434	chr8:125630655-126324432	Strong transcription Enhancers Weak transcription Active TSS Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	80 gene(s)	inside rSNPs	diseases
2	nsv1030748	chr8:126012282-126137840	ZNF genes & repeats Enhancers Strong transcription Weak transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
3	nsv539743	chr8:126012282-126137840	Active TSS Strong transcription Weak transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:126013400-126040400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
2	chr8:126013400-126042600	Weak transcription	Right Ventricle	heart
3	chr8:126013600-126052200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
4	chr8:126014600-126044000	Weak transcription	Stomach Mucosa	stomach
5	chr8:126015400-126098000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
6	chr8:126015600-126039000	Strong transcription	HUES64 Cell Line	embryonic stem cell
7	chr8:126015600-126041000	Strong transcription	Fetal Thymus	thymus
8	chr8:126016000-126041400	Strong transcription	Liver	Liver
9	chr8:126019600-126071800	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr8:126021200-126041200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr8:126023600-126099000	Strong transcription	Monocytes-CD14+_RO01746	blood
12	chr8:126024600-126043200	Weak transcription	Fetal Brain Male	brain
13	chr8:126026600-126038600	Strong transcription	Dnd41	blood
14	chr8:126027600-126044400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
15	chr8:126027800-126038800	Strong transcription	Primary T helper cells fromperipheralblood	blood
16	chr8:126027800-126040800	Strong transcription	Rectal Mucosa Donor 31	rectum
17	chr8:126028200-126044800	Strong transcription	Primary B cells from cord blood	blood
18	chr8:126028200-126072000	Strong transcription	Primary T helper cells PMA-I stimulated	--
19	chr8:126028400-126040200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr8:126028400-126066200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
21	chr8:126028600-126038600	Strong transcription	Fetal Intestine Large	intestine
22	chr8:126028600-126097400	Strong transcription	Primary neutrophils fromperipheralblood	blood
23	chr8:126028800-126041800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
24	chr8:126028800-126072200	Strong transcription	Adipose Nuclei	Adipose
25	chr8:126029000-126041000	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
26	chr8:126029400-126044000	Weak transcription	Pancreas	Pancrea
27	chr8:126029600-126066200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
28	chr8:126029800-126097400	Strong transcription	Primary monocytes fromperipheralblood	blood
29	chr8:126029800-126103000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
30	chr8:126030600-126042200	Weak transcription	Psoas Muscle	Psoas
31	chr8:126030600-126049800	Weak transcription	Pancreatic Islets	Pancreatic Islet
32	chr8:126031200-126058800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
33	chr8:126031800-126046400	Weak transcription	Colonic Mucosa	Colon
34	chr8:126031800-126049800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
35	chr8:126032000-126043200	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
36	chr8:126032000-126043200	Weak transcription	Placenta Amnion	Placenta Amnion
37	chr8:126032000-126044200	Weak transcription	H9 Cell Line	embryonic stem cell
38	chr8:126032000-126050000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
39	chr8:126032200-126038600	Strong transcription	NHDF-Ad	bronchial
40	chr8:126032600-126038600	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
41	chr8:126032800-126050600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
42	chr8:126033400-126044000	Weak transcription	HepG2	liver
43	chr8:126034400-126044200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
44	chr8:126035200-126041000	Strong transcription	Fetal Lung	lung
45	chr8:126035200-126041200	Strong transcription	Sigmoid Colon	Sigmoid Colon
46	chr8:126036200-126040200	Weak transcription	Fetal Heart	heart
47	chr8:126036400-126039600	Weak transcription	HUES6 Cell Line	embryonic stem cell
48	chr8:126036400-126040200	Weak transcription	GM12878-XiMat	blood
49	chr8:126036400-126041600	Weak transcription	NHEK	skin
50	chr8:126036400-126042400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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