Variant report

Variant	rs16900479
Chromosome Location	chr8:126267928-126267929
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:126263866..126265400-chr8:126266377..126268618,2	MCF-7	breast:
2	chr8:126266479..126269155-chr8:126273088..126274738,2	MCF-7	breast:
3	chr8:126267067..126268793-chr8:126270995..126272516,2	MCF-7	breast:
4	chr8:126266568..126268144-chr8:126440579..126442912,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000173334	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs17403341	1.00[CHB][hapmap]
rs6651237	1.00[CHB][hapmap]
rs7824635	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv891434	chr8:125630655-126324432	Strong transcription Enhancers Weak transcription Active TSS Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	80 gene(s)	inside rSNPs	diseases
2	nsv949614	chr8:126063646-126376699	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:48 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:126239600-126274000	Weak transcription	Primary T cells fromperipheralblood	blood
2	chr8:126245600-126269600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr8:126251400-126272000	Weak transcription	Fetal Intestine Small	intestine
4	chr8:126254000-126270400	Weak transcription	Hela-S3	cervix
5	chr8:126255200-126268600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr8:126255200-126271600	Weak transcription	Right Atrium	heart
7	chr8:126255400-126287800	Weak transcription	Primary B cells from cord blood	blood
8	chr8:126256200-126271600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr8:126256400-126271800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr8:126256600-126268800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr8:126257400-126273600	Weak transcription	Primary T helper cells PMA-I stimulated	--
12	chr8:126260600-126269400	Weak transcription	Fetal Lung	lung
13	chr8:126261400-126286000	Weak transcription	Sigmoid Colon	Sigmoid Colon
14	chr8:126261600-126272600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
15	chr8:126262200-126268800	Weak transcription	Pancreas	Pancrea
16	chr8:126262200-126288200	Weak transcription	Ovary	ovary
17	chr8:126263400-126279000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
18	chr8:126264200-126268200	Enhancers	HUES48 Cell Line	embryonic stem cell
19	chr8:126264400-126268000	Enhancers	HUES6 Cell Line	embryonic stem cell
20	chr8:126264400-126272000	Weak transcription	Rectal Mucosa Donor 31	rectum
21	chr8:126264800-126310600	Weak transcription	Aorta	Aorta
22	chr8:126265000-126268000	Enhancers	iPS-15b Cell Line	embryonic stem cell
23	chr8:126265600-126270600	Weak transcription	Brain Substantia Nigra	brain
24	chr8:126265600-126274800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
25	chr8:126265600-126296600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
26	chr8:126265800-126272000	Weak transcription	Adipose Nuclei	Adipose
27	chr8:126266000-126268000	Enhancers	ES-I3 Cell Line	embryonic stem cell
28	chr8:126266000-126268000	Enhancers	iPS-20b Cell Line	embryonic stem cell
29	chr8:126266000-126273400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
30	chr8:126266200-126268600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
31	chr8:126266200-126270800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
32	chr8:126266200-126274000	Weak transcription	Fetal Thymus	thymus
33	chr8:126266800-126268200	Enhancers	HUES64 Cell Line	embryonic stem cell
34	chr8:126267000-126268200	Enhancers	H9 Cell Line	embryonic stem cell
35	chr8:126267000-126268200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
36	chr8:126267400-126268800	Enhancers	Primary B cells from peripheral blood	blood
37	chr8:126267400-126271600	Weak transcription	Gastric	stomach
38	chr8:126267400-126276400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
39	chr8:126267600-126268600	Enhancers	Primary monocytes fromperipheralblood	blood
40	chr8:126267600-126271400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
41	chr8:126267800-126268000	Flanking Active TSS	GM12878-XiMat	blood
42	chr8:126267800-126268200	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
43	chr8:126267800-126268400	Enhancers	Monocytes-CD14+_RO01746	blood
44	chr8:126267800-126270400	Weak transcription	Cortex derived primary cultured neurospheres	brain
45	chr8:126267800-126271400	Weak transcription	Psoas Muscle	Psoas
46	chr8:126267800-126273200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
47	chr8:126267800-126274600	Weak transcription	Primary T cells from cord blood	blood
48	chr8:126267800-126276200	Weak transcription	H1 Cell Line	embryonic stem cell

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