Variant report

Variant	rs16903525
Chromosome Location	chr5:37164606-37164607
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:37161788..37164617-chr5:37168284..37171187,2	K562	blood:
2	chr5:37161560..37164016-chr5:37164106..37165808,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000197603	Chromatin interaction

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs1045908	0.82[YRI][hapmap]
rs16903425	0.82[YRI][hapmap]
rs16903513	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16903518	0.95[LWK][hapmap];0.95[MKK][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16903532	1.00[ASW][hapmap];1.00[YRI][hapmap]
rs61746147	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7702892	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes]
rs7718766	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes]
rs9687470	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:16 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv525478	chr5:36804225-37349895	Strong transcription Transcr. at gene 5' and 3' Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
2	esv1793961	chr5:36866835-37361728	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	65 gene(s)	inside rSNPs	diseases
3	nsv530225	chr5:36886635-37331912	Weak transcription Strong transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
4	nsv1024051	chr5:36899712-37303001	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
5	nsv537725	chr5:36899712-37303001	Strong transcription Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
6	nsv530226	chr5:36906377-37606367	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
7	esv1802391	chr5:36958598-37242600	Strong transcription Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
8	nsv534064	chr5:37054962-37586210	Active TSS Strong transcription Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
9	nsv881511	chr5:37088627-37552852	Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
10	nsv597823	chr5:37111565-37430365	Strong transcription Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Enhancers Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	42 gene(s)	inside rSNPs	diseases
11	nsv1026554	chr5:37112133-37734859	Strong transcription Weak transcription Active TSS Flanking Active TSS Enhancers Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	45 gene(s)	inside rSNPs	diseases
12	nsv537726	chr5:37112133-37734859	Weak transcription Strong transcription Enhancers Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	45 gene(s)	inside rSNPs	diseases
13	nsv1025988	chr5:37115142-37586211	Strong transcription Weak transcription ZNF genes & repeats Genic enhancers Enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
14	nsv537727	chr5:37115142-37586211	Strong transcription Active TSS Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
15	nsv830265	chr5:37152221-37312233	Strong transcription Active TSS Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
16	nsv530227	chr5:37157106-37571999	Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	42 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:117 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:37082800-37169200	Weak transcription	Spleen	Spleen
2	chr5:37112200-37198200	Weak transcription	Small Intestine	intestine
3	chr5:37113600-37222200	Weak transcription	Psoas Muscle	Psoas
4	chr5:37114600-37165400	Weak transcription	HMEC	breast
5	chr5:37133200-37169400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
6	chr5:37134200-37171200	Weak transcription	Colonic Mucosa	Colon
7	chr5:37136200-37197200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
8	chr5:37136800-37170000	Weak transcription	Esophagus	oesophagus
9	chr5:37137400-37174000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
10	chr5:37137600-37169000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
11	chr5:37138400-37196800	Weak transcription	H1 Cell Line	embryonic stem cell
12	chr5:37138600-37179600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
13	chr5:37143400-37189600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
14	chr5:37143800-37169200	Weak transcription	Primary T helper cells PMA-I stimulated	--
15	chr5:37144400-37171400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr5:37146400-37174000	Weak transcription	GM12878-XiMat	blood
17	chr5:37147200-37200600	Strong transcription	HSMM	muscle
18	chr5:37148000-37182000	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
19	chr5:37148600-37189400	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr5:37150600-37176400	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
21	chr5:37151600-37165400	Weak transcription	A549	lung
22	chr5:37151600-37168600	Weak transcription	Fetal Heart	heart
23	chr5:37151600-37168800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
24	chr5:37151600-37197400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
25	chr5:37152200-37168800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
26	chr5:37152200-37169000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
27	chr5:37153000-37170600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
28	chr5:37154000-37166000	Weak transcription	HepG2	liver
29	chr5:37154000-37168800	Weak transcription	Primary T cells from cord blood	blood
30	chr5:37154000-37169000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
31	chr5:37154000-37169200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
32	chr5:37154000-37169200	Weak transcription	Fetal Intestine Small	intestine
33	chr5:37155400-37166200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
34	chr5:37155600-37168600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
35	chr5:37156400-37169200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
36	chr5:37157000-37165600	Weak transcription	Stomach Mucosa	stomach
37	chr5:37157400-37169200	Weak transcription	Lung	lung
38	chr5:37157400-37169200	Weak transcription	Thymus	Thymus
39	chr5:37157400-37171400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
40	chr5:37157600-37168000	Weak transcription	HUES48 Cell Line	embryonic stem cell
41	chr5:37157600-37169000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
42	chr5:37157600-37169000	Weak transcription	Sigmoid Colon	Sigmoid Colon
43	chr5:37157600-37169200	Weak transcription	Gastric	stomach
44	chr5:37157600-37170000	Weak transcription	Pancreas	Pancrea
45	chr5:37157800-37165800	Weak transcription	Duodenum Mucosa	Duodenum
46	chr5:37157800-37166400	Weak transcription	HUES6 Cell Line	embryonic stem cell
47	chr5:37157800-37166800	Weak transcription	Monocytes-CD14+_RO01746	blood
48	chr5:37157800-37167800	Weak transcription	NHEK	skin
49	chr5:37157800-37168800	Weak transcription	Brain Germinal Matrix	brain
50	chr5:37157800-37168800	Weak transcription	Fetal Kidney	kidney

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