Variant report

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10513213	1.00[CEU][hapmap]
rs10817521	0.88[CHB][hapmap];0.94[JPT][hapmap];0.86[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs10817523	0.83[AMR][1000 genomes]
rs10981856	1.00[CEU][hapmap]
rs10981930	0.86[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs10981945	0.83[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs10981983	0.83[AMR][1000 genomes]
rs10981990	0.82[AMR][1000 genomes]
rs12551439	0.92[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs1326324	0.83[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs1536967	0.83[AMR][1000 genomes]
rs1571033	0.83[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs1590887	0.83[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs16910261	0.87[AMR][1000 genomes]
rs35929232	0.84[AMR][1000 genomes]
rs7030932	1.00[CEU][hapmap]
rs7032965	0.83[AMR][1000 genomes]
rs7039786	1.00[CEU][hapmap]
rs913078	0.89[CHB][hapmap];0.94[JPT][hapmap];0.90[ASN][1000 genomes]
rs9777523	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430093	chr9:116330446-117325446	Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	165 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:116550000-116553800	Enhancers	Brain Germinal Matrix	brain
2	chr9:116551400-116556000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
3	chr9:116552000-116555800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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