Variant report

Variant	rs16909463
Chromosome Location	chr10:52576430-52576431
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10994247	1.00[JPT][hapmap]
rs10994507	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13189	1.00[JPT][hapmap]
rs41274048	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs41283528	0.91[ASN][1000 genomes]
rs4497350	1.00[JPT][hapmap]
rs6479702	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1035197	chr10:52446582-52622349	Flanking Active TSS Active TSS Weak transcription Enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs16909463	ASAH2	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:52565800-52592000	Weak transcription	Stomach Mucosa	stomach
2	chr10:52573400-52588200	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr10:52574400-52577800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr10:52574400-52586600	Strong transcription	Liver	Liver
5	chr10:52574800-52580400	Strong transcription	Rectal Mucosa Donor 29	rectum
6	chr10:52575400-52576800	Strong transcription	Sigmoid Colon	Sigmoid Colon
7	chr10:52575400-52580400	Strong transcription	Fetal Intestine Large	intestine
8	chr10:52575400-52580600	Strong transcription	Rectal Mucosa Donor 31	rectum
9	chr10:52575400-52585600	Strong transcription	HepG2	liver
10	chr10:52575800-52577200	Strong transcription	Duodenum Mucosa	Duodenum
11	chr10:52575800-52577200	Strong transcription	Pancreas	Pancrea
12	chr10:52576400-52576800	Strong transcription	Fetal Intestine Small	intestine

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links