Variant report

Variant	rs16909502
Chromosome Location	chr9:116556524-116556525
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs12346476	1.00[EUR][1000 genomes]
rs16908653	1.00[EUR][1000 genomes]
rs16911462	1.00[EUR][1000 genomes]
rs7027261	1.00[EUR][1000 genomes]
rs7032245	1.00[EUR][1000 genomes]
rs7032414	1.00[EUR][1000 genomes]
rs73544687	1.00[EUR][1000 genomes]
rs73544688	1.00[EUR][1000 genomes]
rs73548441	1.00[EUR][1000 genomes]
rs73655894	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430093	chr9:116330446-117325446	Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	165 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:116555800-116557000	Enhancers	HUES6 Cell Line	embryonic stem cell
2	chr9:116555800-116557000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
3	chr9:116555800-116557800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr9:116556000-116556800	Enhancers	H1 Cell Line	embryonic stem cell
5	chr9:116556000-116557200	Enhancers	iPS-18 Cell Line	embryonic stem cell
6	chr9:116556200-116556600	Enhancers	iPS-20b Cell Line	embryonic stem cell
7	chr9:116556200-116556600	Enhancers	HepG2	liver
8	chr9:116556400-116557000	Enhancers	ES-I3 Cell Line	embryonic stem cell
9	chr9:116556400-116558000	Enhancers	H9 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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