Variant report

Variant	rs16909866
Chromosome Location	chr10:52593770-52593771
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10508933	1.00[YRI][hapmap]
rs11591939	0.80[CHB][hapmap]
rs12357484	1.00[YRI][hapmap]
rs12414527	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12570156	0.83[ASN][1000 genomes]
rs12769066	0.95[CHB][hapmap];0.82[ASN][1000 genomes]
rs16910313	0.96[CHB][hapmap];0.82[ASN][1000 genomes]
rs16910442	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs16910492	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4459236	0.96[CHB][hapmap];0.82[JPT][hapmap];0.82[ASN][1000 genomes]
rs4460764	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1035197	chr10:52446582-52622349	Flanking Active TSS Active TSS Weak transcription Enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:52576800-52597200	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr10:52580400-52643200	Weak transcription	Rectal Mucosa Donor 29	rectum
3	chr10:52581600-52595800	Weak transcription	Fetal Intestine Small	intestine
4	chr10:52584800-52594000	Weak transcription	Pancreas	Pancrea
5	chr10:52585200-52617200	Weak transcription	Rectal Mucosa Donor 31	rectum
6	chr10:52592600-52594200	Genic enhancers	HepG2	liver
7	chr10:52592800-52598000	Genic enhancers	Liver	Liver
8	chr10:52593200-52596200	Strong transcription	Fetal Intestine Large	intestine
9	chr10:52593600-52594800	Strong transcription	Duodenum Mucosa	Duodenum

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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