Variant report

Variant	rs16914420
Chromosome Location	chr10:51542615-51542616
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:51532580..51534464-chr10:51540648..51542621,2	MCF-7	breast:
2	chr10:47596779..47599556-chr10:51541825..51544228,2	MCF-7	breast:
3	chr10:51535106..51538475-chr10:51540322..51544715,4	MCF-7	breast:
4	chr10:51535395..51539770-chr10:51541665..51546019,6	MCF-7	breast:

Variant related genes	Relation type
ENSG00000230553	Chromatin interaction

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs11003820	1.00[AMR][1000 genomes]
rs11004361	1.00[AMR][1000 genomes]
rs11004455	1.00[AMR][1000 genomes]
rs11005274	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11005729	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12246321	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12247763	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12249198	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12250658	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16914406	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56301424	1.00[AMR][1000 genomes]
rs59436713	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60528425	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74131171	1.00[AMR][1000 genomes]
rs74131182	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758219	chr10:50971974-51925166	Enhancers Active TSS Transcr. at gene 5' and 3' Strong transcription Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
2	esv2759749	chr10:50971974-51925166	Strong transcription Weak transcription Active TSS Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
3	nsv428232	chr10:50971974-51925166	Enhancers Flanking Active TSS Weak transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
4	esv1830900	chr10:51187411-51903662	Weak transcription Flanking Active TSS Active TSS Enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases
5	nsv895383	chr10:51260747-51724915	Strong transcription Enhancers Active TSS Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
6	nsv1048474	chr10:51330433-51545872	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
7	nsv508583	chr10:51385007-51595892	Active TSS Weak transcription Flanking Active TSS Enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
8	esv1815597	chr10:51525699-51804254	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:51535400-51547200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr10:51539600-51544600	Enhancers	HUES6 Cell Line	embryonic stem cell
3	chr10:51539800-51544400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr10:51539800-51545000	Enhancers	Primary hematopoietic stem cells short term culture	blood
5	chr10:51539800-51545400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr10:51540200-51544200	Weak transcription	Thymus	Thymus
7	chr10:51540800-51544800	Enhancers	K562	blood
8	chr10:51541000-51542800	Enhancers	H1 Cell Line	embryonic stem cell
9	chr10:51541000-51543000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr10:51541000-51543000	Enhancers	iPS-18 Cell Line	embryonic stem cell
11	chr10:51541000-51543800	Enhancers	HUES64 Cell Line	embryonic stem cell
12	chr10:51541000-51544800	Enhancers	ES-I3 Cell Line	embryonic stem cell
13	chr10:51541200-51542800	Enhancers	ES-WA7 Cell Line	embryonic stem cell
14	chr10:51541200-51543000	Enhancers	iPS-20b Cell Line	embryonic stem cell
15	chr10:51541200-51543400	Enhancers	iPS-15b Cell Line	embryonic stem cell
16	chr10:51541400-51545000	Enhancers	Stomach Mucosa	stomach
17	chr10:51542000-51543800	Enhancers	Breast Myoepithelial Primary Cells	Breast
18	chr10:51542000-51544000	Enhancers	Esophagus	oesophagus
19	chr10:51542000-51544200	Weak transcription	Primary monocytes fromperipheralblood	blood
20	chr10:51542200-51543800	Flanking Active TSS	HepG2	liver
21	chr10:51542200-51544000	Weak transcription	Fetal Thymus	thymus
22	chr10:51542400-51542800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
23	chr10:51542400-51543600	Enhancers	Placenta	Placenta
24	chr10:51542600-51542800	Enhancers	H9 Cell Line	embryonic stem cell
25	chr10:51542600-51542800	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
26	chr10:51542600-51543000	Flanking Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
27	chr10:51542600-51544800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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