Variant report

Variant	rs16915429
Chromosome Location	chr10:52966912-52966913
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs11813092	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11818857	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12264657	1.00[CEU][hapmap]
rs16914946	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7099483	1.00[EUR][1000 genomes]
rs73335811	1.00[EUR][1000 genomes]
rs73335813	1.00[EUR][1000 genomes]
rs7905752	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1036645	chr10:52804961-53159076	Enhancers Bivalent/Poised TSS Bivalent Enhancer Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:52950400-52975800	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr10:52958800-52975600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr10:52961600-52968200	Weak transcription	Aorta	Aorta
4	chr10:52964600-52967200	Weak transcription	Psoas Muscle	Psoas
5	chr10:52964600-52973600	Weak transcription	Skeletal Muscle Female	skeletal muscle
6	chr10:52964600-52974400	Weak transcription	HUES64 Cell Line	embryonic stem cell
7	chr10:52964800-52974000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
8	chr10:52965200-52968400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr10:52966400-52967200	Enhancers	Breast Myoepithelial Primary Cells	Breast
10	chr10:52966400-52967600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr10:52966400-52969800	Enhancers	Colon Smooth Muscle	Colon
12	chr10:52966600-52967400	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr10:52966600-52967400	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr10:52966800-52967000	Enhancers	ES-I3 Cell Line	embryonic stem cell
15	chr10:52966800-52967400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr10:52966800-52968800	Weak transcription	Duodenum Smooth Muscle	Duodenum
17	chr10:52966800-52969200	Enhancers	Rectal Smooth Muscle	rectum

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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