Variant report

Variant	rs16919263
Chromosome Location	chr8:54442157-54442158
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs16919271	1.00[EUR][1000 genomes]
rs16922706	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2752674	chr8:54181147-54483747	Flanking Active TSS Weak transcription Active TSS Enhancers ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:54440200-54443400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr8:54441200-54442600	Enhancers	HMEC	breast
3	chr8:54441400-54442600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr8:54441800-54442200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr8:54441800-54442200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr8:54441800-54442200	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr8:54441800-54442200	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr8:54441800-54442200	Enhancers	Fetal Muscle Trunk	muscle
9	chr8:54441800-54442200	Enhancers	Ovary	ovary
10	chr8:54441800-54442200	Flanking Active TSS	NHEK	skin
11	chr8:54441800-54442400	Enhancers	Esophagus	oesophagus
12	chr8:54441800-54442800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr8:54442000-54442200	Flanking Active TSS	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr8:54442000-54442200	Active TSS	Breast Myoepithelial Primary Cells	Breast
15	chr8:54442000-54442600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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