Variant report

Variant	rs16919316
Chromosome Location	chr8:54459387-54459388
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs12114990	0.91[ASN][1000 genomes]
rs1551906	0.95[ASN][1000 genomes]
rs1551907	0.95[ASN][1000 genomes]
rs1551908	0.95[ASN][1000 genomes]
rs16919325	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1871093	0.95[ASN][1000 genomes]
rs28448344	0.95[ASN][1000 genomes]
rs28498249	0.95[ASN][1000 genomes]
rs6473849	0.96[ASN][1000 genomes]
rs7008567	1.00[ASN][1000 genomes]
rs7011096	0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2752674	chr8:54181147-54483747	Flanking Active TSS Weak transcription Active TSS Enhancers ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:54459200-54459800	Active TSS	Gastric	stomach

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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