Variant report

Variant	rs16919410
Chromosome Location	chr11:93561506-93561507
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:93549611..93555766-chr11:93556424..93562226,8	K562	blood:
2	chr11:93561270..93566142-chr11:93569079..93572564,4	K562	blood:

Variant related genes	Relation type
ENSG00000214376	Chromatin interaction

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10831109	1.00[MEX][hapmap]
rs11020471	1.00[MEX][hapmap]
rs11020474	1.00[MEX][hapmap]
rs16919376	1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs16919379	1.00[EUR][1000 genomes]
rs16919383	1.00[EUR][1000 genomes]
rs16919384	1.00[EUR][1000 genomes]
rs16919386	1.00[EUR][1000 genomes]
rs16919387	1.00[EUR][1000 genomes]
rs16919390	1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs16919393	1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs16919459	1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs2212995	1.00[EUR][1000 genomes]
rs2226872	1.00[EUR][1000 genomes]
rs2434983	1.00[TSI][hapmap]
rs34028557	1.00[EUR][1000 genomes]
rs34298528	1.00[EUR][1000 genomes]
rs34298809	1.00[EUR][1000 genomes]
rs34631197	1.00[EUR][1000 genomes]
rs35454774	1.00[EUR][1000 genomes]
rs35642511	1.00[EUR][1000 genomes]
rs35646601	1.00[EUR][1000 genomes]
rs4284369	1.00[TSI][hapmap]
rs4372406	1.00[EUR][1000 genomes]
rs56893874	1.00[EUR][1000 genomes]
rs57340156	1.00[EUR][1000 genomes]
rs592526	1.00[TSI][hapmap]
rs607826	1.00[TSI][hapmap]
rs61628694	1.00[EUR][1000 genomes]
rs657177	1.00[TSI][hapmap]
rs7103189	1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs7108692	1.00[EUR][1000 genomes]
rs7109799	1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs7112202	1.00[EUR][1000 genomes]
rs7112720	1.00[EUR][1000 genomes]
rs7112990	1.00[EUR][1000 genomes]
rs7119915	1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs7120747	1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs7934848	1.00[EUR][1000 genomes]
rs7943111	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898181	chr11:93072843-93662459	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	119 gene(s)	inside rSNPs	diseases
2	nsv898182	chr11:93381845-93637462	Strong transcription Genic enhancers Active TSS Enhancers Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	108 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:93546400-93566200	Weak transcription	Brain Angular Gyrus	brain
2	chr11:93550800-93564400	Weak transcription	Pancreas	Pancrea
3	chr11:93554200-93567200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr11:93554800-93562800	Weak transcription	Rectal Mucosa Donor 31	rectum
5	chr11:93555600-93564400	Weak transcription	Fetal Intestine Small	intestine
6	chr11:93556000-93562200	Weak transcription	Stomach Mucosa	stomach
7	chr11:93560600-93563600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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