Variant report

Variant	rs16919522
Chromosome Location	chr8:54653192-54653193
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:54651332..54653261-chr8:54754407..54756402,2	MCF-7	breast:
2	chr8:54652211..54654707-chr8:54657866..54660858,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000047249	Chromatin interaction

Extended variants
information (count: 91 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:87)

rs_ID	r²[population]
rs1031979	0.94[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];0.90[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1031980	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];0.82[MEX][hapmap];0.94[ASN][1000 genomes]
rs10435587	1.00[CEU][hapmap];0.98[CHD][hapmap];0.95[JPT][hapmap];0.82[MEX][hapmap];0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11994467	0.88[ASN][1000 genomes]
rs11996300	0.89[ASN][1000 genomes]
rs12056486	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12056719	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[JPT][hapmap];0.82[MEX][hapmap];1.00[ASN][1000 genomes]
rs12234972	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.92[GIH][hapmap];0.95[JPT][hapmap];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13276766	0.85[ASN][1000 genomes]
rs1552148	1.00[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs16919507	1.00[CEU][hapmap];0.86[CHB][hapmap];0.85[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16919508	1.00[CEU][hapmap];0.86[CHB][hapmap];0.83[CHD][hapmap];0.82[MEX][hapmap];0.83[EUR][1000 genomes]
rs16919534	0.94[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.80[GIH][hapmap];1.00[JPT][hapmap];0.95[LWK][hapmap];0.91[MEX][hapmap];0.92[MKK][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16919537	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16919541	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs16919563	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs16919571	0.94[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.93[LWK][hapmap];0.91[MEX][hapmap];1.00[TSI][hapmap];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs16919573	0.94[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];1.00[GIH][hapmap];0.90[JPT][hapmap];0.95[LWK][hapmap];1.00[MEX][hapmap];0.81[MKK][hapmap];1.00[TSI][hapmap];0.92[YRI][hapmap];0.80[AFR][1000 genomes];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1872063	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap];0.81[MEX][hapmap];0.90[ASN][1000 genomes]
rs1905061	1.00[CEU][hapmap];0.96[YRI][hapmap];0.88[AFR][1000 genomes];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2128150	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.98[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2170444	0.94[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];1.00[GIH][hapmap];0.90[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2376011	0.94[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.91[LWK][hapmap];1.00[MEX][hapmap];0.82[MKK][hapmap];1.00[TSI][hapmap];0.92[YRI][hapmap];0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3735831	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.80[GIH][hapmap];0.95[JPT][hapmap];1.00[MEX][hapmap];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3757954	0.83[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs41321146	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.82[MEX][hapmap];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4236945	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.95[JPT][hapmap];0.82[MEX][hapmap];0.93[ASN][1000 genomes]
rs4737192	0.94[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.91[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.89[YRI][hapmap];0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4737518	0.83[EUR][1000 genomes]
rs4737554	1.00[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];0.80[GIH][hapmap];0.95[JPT][hapmap];0.82[LWK][hapmap];0.82[MEX][hapmap];0.85[YRI][hapmap];0.80[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4737558	1.00[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];0.80[GIH][hapmap];0.95[JPT][hapmap];0.81[LWK][hapmap];0.82[MEX][hapmap];0.84[YRI][hapmap];0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4737753	1.00[MEX][hapmap];0.83[TSI][hapmap];0.86[EUR][1000 genomes]
rs4737761	0.85[CEU][hapmap];0.86[EUR][1000 genomes]
rs4737764	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.95[JPT][hapmap];0.82[MEX][hapmap];0.93[ASN][1000 genomes]
rs4737765	0.94[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.91[LWK][hapmap];1.00[MEX][hapmap];0.83[TSI][hapmap];0.89[YRI][hapmap];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4737821	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.81[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs4737974	1.00[CEU][hapmap];0.91[MEX][hapmap];0.83[EUR][1000 genomes]
rs4738025	1.00[CEU][hapmap]
rs4738027	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs4738470	0.85[ASN][1000 genomes]
rs4738646	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4738701	1.00[CEU][hapmap];0.86[CHB][hapmap];0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4738884	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.80[GIH][hapmap];1.00[JPT][hapmap];0.82[MEX][hapmap];0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4738916	1.00[CEU][hapmap];0.96[YRI][hapmap];0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs55682919	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs55876329	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs55964335	0.86[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs56818292	0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs56956173	0.83[EUR][1000 genomes]
rs56973376	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs57550901	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs58473841	0.81[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs58558817	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58970885	0.83[EUR][1000 genomes]
rs61070518	0.88[ASN][1000 genomes]
rs6473893	1.00[CEU][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.91[EUR][1000 genomes]
rs6984257	1.00[CEU][hapmap];0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6986372	0.85[CEU][hapmap];0.81[CHB][hapmap];0.90[JPT][hapmap];0.82[MEX][hapmap];0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6987427	0.94[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[LWK][hapmap];1.00[MEX][hapmap];0.87[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6988009	1.00[CEU][hapmap];0.81[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs6988082	1.00[CEU][hapmap];0.86[CHB][hapmap];0.83[CHD][hapmap];0.80[GIH][hapmap];0.82[MEX][hapmap];0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6988808	1.00[CEU][hapmap];0.82[MEX][hapmap]
rs6988812	0.84[CHB][hapmap];0.94[JPT][hapmap];0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6994851	0.94[ASW][hapmap];1.00[CEU][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.93[EUR][1000 genomes]
rs6997003	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6997127	0.94[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.91[LWK][hapmap];0.91[MEX][hapmap];1.00[TSI][hapmap];0.89[YRI][hapmap];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6999454	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7005696	1.00[CEU][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.93[EUR][1000 genomes]
rs7006934	0.85[CEU][hapmap];0.81[CHB][hapmap];0.93[EUR][1000 genomes]
rs7009705	0.83[EUR][1000 genomes]
rs7018162	1.00[CEU][hapmap];0.82[YRI][hapmap];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73587624	0.83[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs73587627	0.81[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs73680321	0.83[EUR][1000 genomes]
rs73682549	1.00[EUR][1000 genomes]
rs73682551	0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73682552	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73682555	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73682568	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73682570	0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7387704	0.81[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs7843701	1.00[CEU][hapmap];0.86[CHB][hapmap];0.90[CHD][hapmap];0.90[JPT][hapmap];0.82[MEX][hapmap];0.93[ASN][1000 genomes]
rs900163	0.94[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[LWK][hapmap];1.00[MEX][hapmap];0.87[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs958268	1.00[CEU][hapmap];0.86[CHB][hapmap];0.83[EUR][1000 genomes]
rs9643480	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9643819	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9643820	1.00[CEU][hapmap];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758159	chr8:54474589-54737473	Enhancers Strong transcription Weak transcription ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	esv2759616	chr8:54474589-54737473	Weak transcription Enhancers Strong transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv1021775	chr8:54631303-54827173	Weak transcription Flanking Bivalent TSS/Enh Strong transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
4	nsv539621	chr8:54631303-54827173	Weak transcription Flanking Bivalent TSS/Enh Active TSS Genic enhancers Enhancers Flanking Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:121 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:54627400-54663400	Weak transcription	Hela-S3	cervix
2	chr8:54635000-54660200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr8:54641000-54654400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr8:54642600-54672800	Weak transcription	Right Ventricle	heart
5	chr8:54645200-54654800	Weak transcription	Brain Cingulate Gyrus	brain
6	chr8:54645600-54654600	Weak transcription	HSMM	muscle
7	chr8:54645600-54654800	Weak transcription	Osteobl	bone
8	chr8:54645600-54655000	Weak transcription	NH-A	brain
9	chr8:54645600-54671400	Weak transcription	NHLF	lung
10	chr8:54646000-54672600	Weak transcription	Psoas Muscle	Psoas
11	chr8:54646800-54654400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
12	chr8:54647000-54654800	Weak transcription	Brain Angular Gyrus	brain
13	chr8:54647200-54666600	Weak transcription	Brain Substantia Nigra	brain
14	chr8:54647600-54654400	Weak transcription	Rectal Smooth Muscle	rectum
15	chr8:54647600-54654800	Weak transcription	Fetal Kidney	kidney
16	chr8:54647600-54661600	Weak transcription	Brain Inferior Temporal Lobe	brain
17	chr8:54647600-54666600	Weak transcription	A549	lung
18	chr8:54647800-54654200	Weak transcription	Brain Anterior Caudate	brain
19	chr8:54647800-54654800	Weak transcription	Skeletal Muscle Male	skeletal muscle
20	chr8:54647800-54654800	Weak transcription	Skeletal Muscle Female	skeletal muscle
21	chr8:54648000-54654200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
22	chr8:54648600-54667200	Weak transcription	HSMMtube	muscle
23	chr8:54649800-54654400	Weak transcription	Brain Hippocampus Middle	brain
24	chr8:54649800-54656000	Weak transcription	Fetal Stomach	stomach
25	chr8:54649800-54657200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
26	chr8:54650200-54653600	Strong transcription	Primary T helper cells PMA-I stimulated	--
27	chr8:54650200-54654400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
28	chr8:54650200-54654400	Weak transcription	Esophagus	oesophagus
29	chr8:54650200-54654400	Weak transcription	Gastric	stomach
30	chr8:54650200-54654400	Weak transcription	Left Ventricle	heart
31	chr8:54650200-54654400	Weak transcription	Pancreas	Pancrea
32	chr8:54650200-54654400	Weak transcription	HepG2	liver
33	chr8:54650200-54654600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
34	chr8:54650200-54654600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
35	chr8:54650200-54654600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
36	chr8:54650200-54654800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
37	chr8:54650200-54654800	Weak transcription	Aorta	Aorta
38	chr8:54650200-54654800	Weak transcription	Fetal Muscle Leg	muscle
39	chr8:54650200-54655000	Weak transcription	Fetal Brain Female	brain
40	chr8:54650200-54657000	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
41	chr8:54650200-54657400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
42	chr8:54650200-54657600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
43	chr8:54650200-54661000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
44	chr8:54650200-54661200	Weak transcription	Pancreatic Islets	Pancreatic Islet
45	chr8:54650200-54661400	Weak transcription	Stomach Mucosa	stomach
46	chr8:54650200-54663400	Weak transcription	Brain Germinal Matrix	brain
47	chr8:54650200-54671000	Weak transcription	H9 Cell Line	embryonic stem cell
48	chr8:54650200-54707400	Weak transcription	HUVEC	blood vessel
49	chr8:54650400-54655800	Weak transcription	NHDF-Ad	bronchial
50	chr8:54650800-54656800	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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