Variant report

Variant	rs16922131
Chromosome Location	chr8:58333250-58333251
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:58332845..58333756-chr8:59307075..59308444,4	K562	blood:
2	chr8:58332657..58333329-chr8:58487609..58488171,2	MCF-7	breast:
3	chr8:58332707..58333926-chr8:58403565..58404649,11	MCF-7	breast:
4	chr8:58332821..58333771-chr8:58403706..58404764,4	MCF-7	breast:
5	chr8:58332553..58333478-chr8:59230571..59231163,3	K562	blood:

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10086018	0.87[ASN][1000 genomes]
rs10086935	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10101274	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10112629	0.99[ASN][1000 genomes]
rs11990437	0.91[ASN][1000 genomes]
rs12156322	0.88[ASN][1000 genomes]
rs1316350	0.97[ASN][1000 genomes]
rs13251134	0.85[ASN][1000 genomes]
rs13271121	0.92[ASN][1000 genomes]
rs16922170	0.91[ASN][1000 genomes]
rs17332173	0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17819759	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs34246249	0.91[ASN][1000 genomes]
rs34515816	0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs34781696	0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs34896551	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs35060274	0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs35195028	0.88[ASN][1000 genomes]
rs35530875	0.88[ASN][1000 genomes]
rs35714499	0.91[ASN][1000 genomes]
rs35879589	0.85[ASN][1000 genomes]
rs36029122	0.91[ASN][1000 genomes]
rs36037881	0.91[ASN][1000 genomes]
rs56198564	0.89[ASN][1000 genomes]
rs62514797	0.91[ASN][1000 genomes]
rs6471603	0.88[ASN][1000 genomes]
rs6471604	0.88[ASN][1000 genomes]
rs6471605	0.88[ASN][1000 genomes]
rs6980937	0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6988870	0.91[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs6991061	0.85[ASN][1000 genomes]
rs6991253	0.88[ASN][1000 genomes]
rs6995173	0.89[ASN][1000 genomes]
rs7011998	0.91[ASN][1000 genomes]
rs7816166	0.91[ASN][1000 genomes]
rs7827772	0.88[ASN][1000 genomes]
rs7833343	0.88[ASN][1000 genomes]
rs7844365	0.81[EUR][1000 genomes]
rs7845730	0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9643360	0.88[ASN][1000 genomes]
rs9643499	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758161	chr8:57930392-58474449	Enhancers Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	esv2759618	chr8:57930392-58474449	Enhancers ZNF genes & repeats Weak transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv533217	chr8:57991065-58789001	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
4	nsv890936	chr8:58266339-58564501	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv524390	chr8:58305969-58572471	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv518178	chr8:58328635-58542880	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:58331200-58333400	Weak transcription	Liver	Liver
2	chr8:58333200-58333400	Active TSS	Primary T cells from cord blood	blood
3	chr8:58333200-58333400	Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr8:58333200-58333400	Active TSS	Muscle Satellite Cultured Cells	--
5	chr8:58333200-58333400	Active TSS	Brain Anterior Caudate	brain
6	chr8:58333200-58333400	Enhancers	Brain Cingulate Gyrus	brain
7	chr8:58333200-58333400	Active TSS	Duodenum Smooth Muscle	Duodenum
8	chr8:58333200-58333400	Active TSS	Fetal Kidney	kidney
9	chr8:58333200-58333400	Active TSS	NHDF-Ad	bronchial
10	chr8:58333200-58333600	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr8:58333200-58333600	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr8:58333200-58333600	Active TSS	Colon Smooth Muscle	Colon
13	chr8:58333200-58333600	Active TSS	Right Ventricle	heart
14	chr8:58333200-58333600	Active TSS	Skeletal Muscle Female	skeletal muscle
15	chr8:58333200-58333600	Active TSS	NHEK	skin
16	chr8:58333200-58333600	Active TSS	Osteobl	bone
17	chr8:58333200-58333800	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr8:58333200-58333800	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
19	chr8:58333200-58333800	Flanking Active TSS	Primary B cells from cord blood	blood
20	chr8:58333200-58333800	Active TSS	Adipose Nuclei	Adipose
21	chr8:58333200-58333800	Active TSS	Pancreatic Islets	Pancreatic Islet
22	chr8:58333200-58333800	Active TSS	Ovary	ovary
23	chr8:58333200-58333800	Active TSS	Right Atrium	heart
24	chr8:58333200-58333800	Active TSS	Skeletal Muscle Male	skeletal muscle
25	chr8:58333200-58333800	Active TSS	Stomach Smooth Muscle	stomach
26	chr8:58333200-58333800	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
27	chr8:58333200-58334000	Enhancers	Primary monocytes fromperipheralblood	blood

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