Variant report

Variant	rs16925850
Chromosome Location	chr10:25725491-25725492
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:25724129..25726699-chr10:25734442..25736965,2	K562	blood:

Extended variants
information (count: 111 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:109)

rs_ID	r²[population]
rs10399962	0.89[CEU][hapmap];0.83[CHB][hapmap]
rs10508694	0.90[CHB][hapmap];0.86[JPT][hapmap];1.00[YRI][hapmap]
rs10741077	0.88[JPT][hapmap]
rs10764539	0.92[CHB][hapmap];0.86[JPT][hapmap]
rs10764543	1.00[CEU][hapmap];0.92[CHB][hapmap];0.88[JPT][hapmap];0.93[EUR][1000 genomes]
rs10828774	0.87[JPT][hapmap]
rs10828775	0.85[JPT][hapmap]
rs10828777	0.86[JPT][hapmap]
rs10828778	0.88[JPT][hapmap]
rs10828791	0.92[CHB][hapmap];0.88[JPT][hapmap]
rs10828792	0.92[CHB][hapmap];0.88[JPT][hapmap]
rs10828793	1.00[CEU][hapmap];0.92[CHB][hapmap];0.87[JPT][hapmap];0.93[EUR][1000 genomes]
rs10828807	0.89[CEU][hapmap]
rs11014510	0.83[AMR][1000 genomes]
rs11014527	0.92[CHB][hapmap];0.81[JPT][hapmap]
rs11014528	0.82[CHB][hapmap];0.86[JPT][hapmap]
rs11014529	0.92[CHB][hapmap];0.88[JPT][hapmap]
rs11014530	1.00[CEU][hapmap];0.92[CHB][hapmap];0.88[JPT][hapmap];0.93[EUR][1000 genomes]
rs11014550	0.94[CEU][hapmap];0.92[CHB][hapmap];0.88[JPT][hapmap]
rs11014553	1.00[CEU][hapmap];0.92[CHB][hapmap];0.88[JPT][hapmap]
rs11014554	1.00[CEU][hapmap];0.92[CHB][hapmap];0.88[JPT][hapmap];1.00[YRI][hapmap]
rs11014558	0.94[CEU][hapmap]
rs11014559	0.89[CEU][hapmap];0.83[CHB][hapmap]
rs11014561	0.94[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11014564	0.88[CEU][hapmap]
rs1122776	0.92[JPT][hapmap]
rs1148154	0.86[JPT][hapmap]
rs11818261	0.90[CHB][hapmap];0.86[JPT][hapmap]
rs12240665	0.91[CHB][hapmap];0.88[JPT][hapmap]
rs12249852	0.92[CHB][hapmap];0.88[JPT][hapmap]
rs12251868	0.90[CHB][hapmap];0.86[JPT][hapmap]
rs12251917	0.92[CHB][hapmap];0.88[JPT][hapmap]
rs12254479	0.90[CHB][hapmap];0.86[JPT][hapmap]
rs12256851	0.91[CHB][hapmap];0.87[JPT][hapmap]
rs12258671	1.00[CHB][hapmap];0.88[JPT][hapmap]
rs12259043	1.00[CEU][hapmap];0.92[CHB][hapmap];0.88[JPT][hapmap];0.93[EUR][1000 genomes]
rs12259696	1.00[CEU][hapmap];0.92[CHB][hapmap];0.87[JPT][hapmap];0.91[EUR][1000 genomes]
rs12356315	0.83[CEU][hapmap]
rs12358447	1.00[CEU][hapmap];0.92[CHB][hapmap];0.88[JPT][hapmap];1.00[YRI][hapmap];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12762462	0.90[CHB][hapmap];0.86[JPT][hapmap]
rs12764415	0.88[CEU][hapmap]
rs12765005	0.88[CEU][hapmap]
rs12770990	0.88[CEU][hapmap]
rs12773262	1.00[CEU][hapmap];0.92[CHB][hapmap];0.87[JPT][hapmap];1.00[YRI][hapmap]
rs1329259	0.87[JPT][hapmap]
rs1329263	0.87[JPT][hapmap]
rs1329265	0.88[JPT][hapmap]
rs1341963	0.86[JPT][hapmap]
rs1341964	0.88[JPT][hapmap]
rs1341966	0.87[JPT][hapmap]
rs1410932	0.87[JPT][hapmap]
rs1413397	0.88[JPT][hapmap]
rs1576317	0.88[JPT][hapmap]
rs1590836	0.87[JPT][hapmap]
rs1591249	0.88[JPT][hapmap]
rs1591250	0.80[JPT][hapmap]
rs1612200	0.87[JPT][hapmap]
rs1628986	0.86[JPT][hapmap]
rs16925877	0.88[CEU][hapmap]
rs1754251	0.88[JPT][hapmap]
rs1754260	0.87[JPT][hapmap]
rs1754268	0.88[JPT][hapmap]
rs1760716	0.86[JPT][hapmap]
rs1760718	0.86[JPT][hapmap]
rs1760727	0.86[JPT][hapmap]
rs1760728	0.86[JPT][hapmap]
rs1760733	0.88[JPT][hapmap]
rs1760758	0.88[JPT][hapmap]
rs1760759	0.88[JPT][hapmap]
rs1760762	0.87[JPT][hapmap]
rs1760763	0.88[JPT][hapmap]
rs1760766	0.87[JPT][hapmap]
rs1760767	0.86[JPT][hapmap]
rs1773608	0.88[JPT][hapmap]
rs1773612	0.87[JPT][hapmap]
rs1773614	0.88[JPT][hapmap]
rs1773616	0.86[JPT][hapmap]
rs1773617	0.87[JPT][hapmap]
rs1773618	0.88[JPT][hapmap]
rs1773622	0.88[JPT][hapmap]
rs1773623	0.88[JPT][hapmap]
rs1773625	0.80[JPT][hapmap]
rs1773649	0.86[JPT][hapmap]
rs1773650	0.86[JPT][hapmap]
rs1773689	0.88[JPT][hapmap]
rs1773690	0.88[JPT][hapmap]
rs1855461	0.87[JPT][hapmap]
rs2795044	0.86[JPT][hapmap]
rs2807253	0.85[JPT][hapmap]
rs2807255	0.86[JPT][hapmap]
rs4351726	0.88[JPT][hapmap]
rs4431923	1.00[CEU][hapmap];0.92[CHB][hapmap];0.86[JPT][hapmap]
rs489052	0.88[JPT][hapmap]
rs489186	0.88[JPT][hapmap]
rs495338	0.86[JPT][hapmap]
rs495456	0.88[JPT][hapmap]
rs509285	0.86[JPT][hapmap]
rs516071	0.86[JPT][hapmap]
rs541206	0.81[JPT][hapmap]
rs543850	0.81[JPT][hapmap]
rs573812	0.88[JPT][hapmap]
rs7079892	0.88[JPT][hapmap]
rs7094439	0.92[CHB][hapmap];0.88[JPT][hapmap]
rs824590	0.93[JPT][hapmap]
rs824592	0.88[JPT][hapmap]
rs824597	0.86[JPT][hapmap]
rs824598	0.88[JPT][hapmap]
rs824599	0.85[JPT][hapmap]
rs862192	0.81[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3349863	chr10:25614571-25946379	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	esv2760120	chr10:25721094-25728594	Enhancers Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:25724800-25726000	Enhancers	Cortex derived primary cultured neurospheres	brain
2	chr10:25725200-25725800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr10:25725400-25725800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

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