Variant report

Variant	rs16925894
Chromosome Location	chr10:25746462-25746463
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs11014569	0.97[AFR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11014573	0.82[CHB][hapmap];0.85[ASN][1000 genomes]
rs11014575	0.94[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs1418127	0.91[CHB][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs16925884	0.87[YRI][hapmap]
rs16925944	0.86[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs3920656	0.82[CHB][hapmap];0.85[YRI][hapmap];0.88[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3349863	chr10:25614571-25946379	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:25745200-25755000	Weak transcription	Cortex derived primary cultured neurospheres	brain
2	chr10:25745400-25746800	Enhancers	iPS-15b Cell Line	embryonic stem cell
3	chr10:25745400-25754600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
4	chr10:25745600-25746600	Weak transcription	HUES48 Cell Line	embryonic stem cell
5	chr10:25745600-25746600	Weak transcription	HUES6 Cell Line	embryonic stem cell
6	chr10:25746200-25746800	Enhancers	ES-I3 Cell Line	embryonic stem cell
7	chr10:25746200-25746800	Enhancers	iPS-18 Cell Line	embryonic stem cell
8	chr10:25746400-25746600	Enhancers	H1 Cell Line	embryonic stem cell
9	chr10:25746400-25746800	Enhancers	H9 Cell Line	embryonic stem cell
10	chr10:25746400-25746800	Enhancers	HUVEC	blood vessel
11	chr10:25746400-25747600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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