Variant report

Variant	rs16926087
Chromosome Location	chr10:25845278-25845279
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs1360799	1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16926098	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16926123	0.83[YRI][hapmap]
rs16926129	0.83[YRI][hapmap]
rs16926180	1.00[AMR][1000 genomes]
rs41370844	0.93[YRI][hapmap]
rs56022543	1.00[AMR][1000 genomes]
rs57198899	1.00[AMR][1000 genomes]
rs58691965	1.00[AMR][1000 genomes]
rs58738507	1.00[AMR][1000 genomes]
rs61395610	1.00[AMR][1000 genomes]
rs74124066	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3349863	chr10:25614571-25946379	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv550227	chr10:25843019-25865744	Enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:25843000-25847200	Enhancers	Cortex derived primary cultured neurospheres	brain
2	chr10:25843600-25846400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr10:25844800-25846600	Enhancers	HUVEC	blood vessel
4	chr10:25844800-25846600	Enhancers	NH-A	brain
5	chr10:25845000-25845400	Enhancers	HMEC	breast
6	chr10:25845000-25845800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr10:25845000-25845800	Enhancers	K562	blood
8	chr10:25845000-25846400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr10:25845000-25846400	Enhancers	Fetal Stomach	stomach
10	chr10:25845000-25846600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr10:25845200-25845800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr10:25845200-25845800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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