Variant report

Variant	rs16926938
Chromosome Location	chr8:62059768-62059769
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs11992507	1.00[EUR][1000 genomes]
rs16926906	1.00[EUR][1000 genomes]
rs16926908	1.00[AMR][1000 genomes]
rs16926917	1.00[AMR][1000 genomes]
rs16926943	1.00[AMR][1000 genomes]
rs16926967	1.00[AMR][1000 genomes]
rs1835757	1.00[AMR][1000 genomes]
rs1835758	1.00[EUR][1000 genomes]
rs56031720	1.00[EUR][1000 genomes]
rs58939992	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59775198	1.00[EUR][1000 genomes]
rs60235702	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60420622	1.00[EUR][1000 genomes]
rs60556119	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73685726	1.00[EUR][1000 genomes]
rs73685727	1.00[EUR][1000 genomes]
rs73685728	1.00[EUR][1000 genomes]
rs73685729	1.00[EUR][1000 genomes]
rs73685730	1.00[EUR][1000 genomes]
rs73685731	1.00[EUR][1000 genomes]
rs73685732	1.00[EUR][1000 genomes]
rs73685733	1.00[EUR][1000 genomes]
rs73685734	1.00[EUR][1000 genomes]
rs73685735	1.00[EUR][1000 genomes]
rs73685738	1.00[EUR][1000 genomes]
rs73685740	1.00[EUR][1000 genomes]
rs73685742	1.00[EUR][1000 genomes]
rs73685743	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948922	chr8:61818964-62475097	Enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
2	nsv465698	chr8:62036793-62179465	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv611426	chr8:62036793-62179465	Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Active TSS Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv1026243	chr8:62039073-62101123	Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Strong transcription	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:62058400-62062600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr8:62059400-62059800	Enhancers	GM12878-XiMat	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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