Variant report

Variant	rs16927148
Chromosome Location	chr8:62202385-62202386
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs16926861	1.00[EUR][1000 genomes]
rs16926875	1.00[EUR][1000 genomes]
rs16926901	1.00[EUR][1000 genomes]
rs16926974	1.00[EUR][1000 genomes]
rs16927039	1.00[EUR][1000 genomes]
rs16927151	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs16927168	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs16927183	1.00[LWK][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948922	chr8:61818964-62475097	Enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
2	nsv1024432	chr8:62086247-62898782	Flanking Active TSS Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
3	nsv831336	chr8:62188396-62364873	Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Enhancers Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:62200200-62202400	Active TSS	Fetal Brain Male	brain
2	chr8:62200200-62202600	Active TSS	Brain Inferior Temporal Lobe	brain
3	chr8:62200200-62203400	Active TSS	Brain Angular Gyrus	brain
4	chr8:62200200-62203400	Active TSS	Fetal Brain Female	brain
5	chr8:62200400-62203400	Active TSS	Brain Anterior Caudate	brain
6	chr8:62201200-62202600	Active TSS	Brain Hippocampus Middle	brain
7	chr8:62202000-62204200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
8	chr8:62202000-62216800	Weak transcription	Brain Cingulate Gyrus	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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