Variant report

Variant	rs16927212
Chromosome Location	chr11:35283795-35283796
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:35275813..35278211-chr11:35282248..35285772,3	MCF-7	breast:
2	chr11:35279012..35286392-chr11:35294737..35300890,10	MCF-7	breast:
3	chr11:35283225..35285771-chr11:35316550..35319379,2	MCF-7	breast:
4	chr11:35280014..35285090-chr11:35412088..35415587,8	MCF-7	breast:
5	chr11:35282207..35284321-chr11:35287540..35289873,2	MCF-7	breast:
6	chr11:35281817..35285244-chr11:35384315..35387489,3	MCF-7	breast:

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10488814	1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs16927196	0.87[LWK][hapmap];1.00[TSI][hapmap]
rs16927209	1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs16927214	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16927220	1.00[EUR][1000 genomes]
rs16927255	1.00[EUR][1000 genomes]
rs16927281	1.00[EUR][1000 genomes]
rs16927304	0.82[LWK][hapmap]
rs6484773	1.00[EUR][1000 genomes]
rs6484777	1.00[EUR][1000 genomes]
rs7102949	1.00[TSI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7106060	1.00[EUR][1000 genomes]
rs7109108	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7125980	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7130500	1.00[EUR][1000 genomes]
rs73439144	1.00[EUR][1000 genomes]
rs7941569	1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7947035	0.86[ASW][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045837	chr11:34893992-35395190	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
2	nsv541004	chr11:35122694-35297414	Strong transcription Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
3	nsv832120	chr11:35277410-35490304	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:35265800-35305800	Weak transcription	HepG2	liver
2	chr11:35270200-35292600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
3	chr11:35270400-35285400	Weak transcription	Brain Germinal Matrix	brain
4	chr11:35270400-35296400	Weak transcription	Brain Cingulate Gyrus	brain
5	chr11:35270400-35307000	Weak transcription	Fetal Brain Male	brain
6	chr11:35270600-35284400	Weak transcription	Brain Hippocampus Middle	brain
7	chr11:35271200-35286400	Weak transcription	Pancreas	Pancrea
8	chr11:35274600-35287400	Weak transcription	HSMMtube	muscle
9	chr11:35277800-35286800	Weak transcription	Liver	Liver
10	chr11:35279000-35285600	Weak transcription	Brain Substantia Nigra	brain
11	chr11:35281200-35283800	Enhancers	NHLF	lung
12	chr11:35282200-35297000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr11:35282200-35297000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
14	chr11:35282400-35289200	Strong transcription	Cortex derived primary cultured neurospheres	brain
15	chr11:35282400-35296600	Weak transcription	Aorta	Aorta
16	chr11:35282600-35284200	Weak transcription	Stomach Smooth Muscle	stomach
17	chr11:35282600-35284400	Weak transcription	Brain Angular Gyrus	brain
18	chr11:35282600-35288600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
19	chr11:35282600-35296800	Weak transcription	Skeletal Muscle Female	skeletal muscle
20	chr11:35282800-35285400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
21	chr11:35282800-35287400	Weak transcription	HSMM	muscle
22	chr11:35283000-35283800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
23	chr11:35283000-35289400	Weak transcription	NHDF-Ad	bronchial
24	chr11:35283000-35302000	Weak transcription	Brain Inferior Temporal Lobe	brain
25	chr11:35283400-35285400	Weak transcription	Fetal Brain Female	brain
26	chr11:35283400-35285400	Weak transcription	Pancreatic Islets	Pancreatic Islet

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links