Variant report

Variant	rs16927304
Chromosome Location	chr11:35331868-35331869
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:35325471..35328883-chr11:35329361..35332564,3	MCF-7	breast:
2	chr11:35330316..35333880-chr11:35383154..35386545,4	MCF-7	breast:

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10488814	0.80[YRI][hapmap]
rs11033073	0.95[LWK][hapmap];1.00[YRI][hapmap]
rs16927196	0.95[LWK][hapmap]
rs16927212	0.82[LWK][hapmap]
rs16927214	0.83[AFR][1000 genomes]
rs7109108	0.90[AFR][1000 genomes]
rs7110985	0.85[YRI][hapmap]
rs7125980	0.86[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045837	chr11:34893992-35395190	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
2	nsv832120	chr11:35277410-35490304	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	esv2758264	chr11:35319320-35480522	Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	esv2759819	chr11:35319320-35480522	Weak transcription Bivalent/Poised TSS Enhancers Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:41 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:35324000-35336200	Enhancers	Primary monocytes fromperipheralblood	blood
2	chr11:35324400-35343200	Weak transcription	Gastric	stomach
3	chr11:35325200-35339000	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr11:35325600-35339200	Strong transcription	Cortex derived primary cultured neurospheres	brain
5	chr11:35327000-35333400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
6	chr11:35327000-35343400	Weak transcription	Fetal Lung	lung
7	chr11:35327200-35340600	Weak transcription	Brain Substantia Nigra	brain
8	chr11:35327400-35339000	Weak transcription	Aorta	Aorta
9	chr11:35327600-35335200	Weak transcription	Esophagus	oesophagus
10	chr11:35327600-35336600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr11:35327600-35337400	Weak transcription	NHDF-Ad	bronchial
12	chr11:35327800-35332200	Weak transcription	Primary B cells from peripheral blood	blood
13	chr11:35327800-35333000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
14	chr11:35327800-35333200	Weak transcription	GM12878-XiMat	blood
15	chr11:35327800-35334800	Weak transcription	Primary hematopoietic stem cells	blood
16	chr11:35327800-35334800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
17	chr11:35327800-35334800	Weak transcription	Pancreas	Pancrea
18	chr11:35327800-35335000	Weak transcription	Brain Germinal Matrix	brain
19	chr11:35327800-35335200	Weak transcription	Left Ventricle	heart
20	chr11:35327800-35335200	Weak transcription	Spleen	Spleen
21	chr11:35327800-35340400	Weak transcription	Brain Hippocampus Middle	brain
22	chr11:35327800-35340800	Weak transcription	NHLF	lung
23	chr11:35329000-35334000	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
24	chr11:35329400-35334800	Weak transcription	Skeletal Muscle Male	skeletal muscle
25	chr11:35329600-35333200	Weak transcription	Primary B cells from cord blood	blood
26	chr11:35329600-35335000	Weak transcription	Brain Anterior Caudate	brain
27	chr11:35329600-35335200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
28	chr11:35329600-35335200	Weak transcription	Skeletal Muscle Female	skeletal muscle
29	chr11:35329600-35340800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
30	chr11:35329800-35333600	Weak transcription	Liver	Liver
31	chr11:35329800-35334800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
32	chr11:35329800-35340600	Weak transcription	Brain Angular Gyrus	brain
33	chr11:35330000-35340800	Weak transcription	Fetal Brain Male	brain
34	chr11:35330200-35335600	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
35	chr11:35330200-35336800	Strong transcription	Fetal Brain Female	brain
36	chr11:35330400-35332200	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
37	chr11:35331400-35332000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
38	chr11:35331400-35332000	Enhancers	Brain Inferior Temporal Lobe	brain
39	chr11:35331600-35332400	Enhancers	Brain Cingulate Gyrus	brain
40	chr11:35331800-35332400	Strong transcription	HepG2	liver
41	chr11:35331800-35334000	Enhancers	Placenta	Placenta

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