Variant report

Variant	rs16928035
Chromosome Location	chr8:62784806-62784807
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:62780628..62782972-chr8:62782976..62785697,2	K562	blood:
2	chr8:62776624..62779311-chr8:62784115..62786084,2	K562	blood:

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10088053	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16928021	1.00[MEX][hapmap]
rs16928027	1.00[MEX][hapmap]
rs16928033	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28793274	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56016636	0.93[ASN][1000 genomes]
rs56125512	0.93[ASN][1000 genomes]
rs56235963	0.93[ASN][1000 genomes]
rs57344387	0.90[ASN][1000 genomes]
rs58080416	1.00[ASN][1000 genomes]
rs58710029	1.00[ASN][1000 genomes]
rs58960042	1.00[ASN][1000 genomes]
rs59120662	0.85[ASN][1000 genomes]
rs60520860	1.00[ASN][1000 genomes]
rs6471975	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs66667350	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67870277	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6991008	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7008718	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7012432	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7012678	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73255128	1.00[ASN][1000 genomes]
rs73255147	1.00[ASN][1000 genomes]
rs73255155	1.00[ASN][1000 genomes]
rs73255157	1.00[ASN][1000 genomes]
rs73682603	1.00[ASN][1000 genomes]
rs73682605	1.00[ASN][1000 genomes]
rs73685132	0.85[ASN][1000 genomes]
rs73685158	1.00[ASN][1000 genomes]
rs73685159	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024432	chr8:62086247-62898782	Flanking Active TSS Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
2	nsv932198	chr8:62336705-62914562	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
3	esv2761430	chr8:62517980-62873803	Weak transcription Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
4	nsv1015216	chr8:62517980-62873803	Enhancers Weak transcription Active TSS Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
5	nsv611427	chr8:62733267-62848952	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
6	nsv831338	chr8:62736394-62913048	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:62783200-62789200	Weak transcription	Fetal Brain Male	brain

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