Variant report

Variant	rs16929168
Chromosome Location	chr8:63465449-63465450
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs16918927	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16929206	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16929234	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16929308	1.00[EUR][1000 genomes]
rs16929351	1.00[EUR][1000 genomes]
rs16929371	1.00[EUR][1000 genomes]
rs16929390	1.00[EUR][1000 genomes]
rs16929430	1.00[EUR][1000 genomes]
rs16929437	1.00[EUR][1000 genomes]
rs2127581	1.00[EUR][1000 genomes]
rs57900808	1.00[EUR][1000 genomes]
rs58391948	1.00[EUR][1000 genomes]
rs58717549	1.00[EUR][1000 genomes]
rs60709086	1.00[EUR][1000 genomes]
rs6993807	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73264897	1.00[EUR][1000 genomes]
rs73266909	1.00[EUR][1000 genomes]
rs73266967	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018879	chr8:63281724-63937632	Enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv831339	chr8:63312449-63501127	Enhancers Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv890959	chr8:63449156-63515522	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	esv2761431	chr8:63458672-63467199	Weak transcription Enhancers Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:63465000-63465800	Enhancers	Cortex derived primary cultured neurospheres	brain
2	chr8:63465200-63465600	Bivalent Enhancer	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr8:63465200-63465600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr8:63465200-63465600	Enhancers	Rectal Smooth Muscle	rectum
5	chr8:63465200-63465800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr8:63465200-63465800	Enhancers	Fetal Brain Male	brain
7	chr8:63465400-63465600	Enhancers	Colon Smooth Muscle	Colon
8	chr8:63465400-63465600	Enhancers	Fetal Brain Female	brain

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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