Variant report
| Variant | rs16929206 |
|---|---|
| Chromosome Location | chr8:63495966-63495967 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:20)
| rs_ID | r2[population] |
|---|---|
| rs16918927 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs16929168 | 0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs16929234 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs16929308 | 1.00[EUR][1000 genomes] |
| rs16929351 | 1.00[EUR][1000 genomes] |
| rs16929371 | 1.00[EUR][1000 genomes] |
| rs16929390 | 1.00[EUR][1000 genomes] |
| rs16929430 | 1.00[EUR][1000 genomes] |
| rs16929437 | 1.00[EUR][1000 genomes] |
| rs2101043 | 1.00[EUR][1000 genomes] |
| rs2101044 | 1.00[EUR][1000 genomes] |
| rs2127581 | 1.00[EUR][1000 genomes] |
| rs57900808 | 1.00[EUR][1000 genomes] |
| rs58391948 | 1.00[EUR][1000 genomes] |
| rs58717549 | 1.00[EUR][1000 genomes] |
| rs60709086 | 1.00[EUR][1000 genomes] |
| rs6993807 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs73264897 | 1.00[EUR][1000 genomes] |
| rs73266909 | 1.00[EUR][1000 genomes] |
| rs73266967 | 1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1018879 | chr8:63281724-63937632 | Enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 12 gene(s) | inside rSNPs | diseases |
| 2 | nsv831339 | chr8:63312449-63501127 | Enhancers Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 3 | nsv890959 | chr8:63449156-63515522 | Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh | Chromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr8:63490600-63497000 | Weak transcription | ES-UCSF4 Cell Line | embryonic stem cell |
