Variant report

Variant	rs16929282
Chromosome Location	chr8:63522266-63522267
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs13259874	0.86[ASN][1000 genomes]
rs1531658	0.86[ASN][1000 genomes]
rs16929279	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs16929312	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs16929361	0.91[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1871591	0.81[EUR][1000 genomes]
rs2928389	0.83[AMR][1000 genomes]
rs59016180	0.85[AMR][1000 genomes]
rs73264859	0.81[EUR][1000 genomes]
rs827681	0.91[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs827700	0.83[AMR][1000 genomes]
rs827706	0.91[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018879	chr8:63281724-63937632	Enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv831340	chr8:63515126-63702660	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv890960	chr8:63516962-63629549	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs16929282	TOX	cis	cerebellum	SCAN
rs16929282	VCPIP1	cis	cerebellum	SCAN

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:63520800-63522600	Enhancers	Cortex derived primary cultured neurospheres	brain
2	chr8:63521600-63522600	Enhancers	Breast Myoepithelial Primary Cells	Breast
3	chr8:63521800-63522400	Enhancers	Fetal Lung	lung
4	chr8:63521800-63522600	Enhancers	Brain Substantia Nigra	brain
5	chr8:63522200-63522600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr8:63522200-63522600	Enhancers	Brain Cingulate Gyrus	brain
7	chr8:63522200-63522600	Enhancers	Skeletal Muscle Male	skeletal muscle

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links