Variant report

Variant	rs16929298
Chromosome Location	chr8:63531664-63531665
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10093544	0.81[EUR][1000 genomes]
rs10107976	0.83[EUR][1000 genomes]
rs11985179	0.83[EUR][1000 genomes]
rs1480118	0.81[EUR][1000 genomes]
rs1480196	0.81[EUR][1000 genomes]
rs16929301	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs16929361	0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1871591	0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2127560	0.80[EUR][1000 genomes]
rs35460576	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6991546	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7001779	0.83[EUR][1000 genomes]
rs7005463	0.83[EUR][1000 genomes]
rs7009434	0.83[EUR][1000 genomes]
rs7012264	0.82[EUR][1000 genomes]
rs73264859	0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7828204	0.82[EUR][1000 genomes]
rs7835219	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9298066	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018879	chr8:63281724-63937632	Enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv831340	chr8:63515126-63702660	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv890960	chr8:63516962-63629549	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs16929298	VCPIP1	cis	cerebellum	SCAN
rs16929298	TOX	cis	cerebellum	SCAN

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:63522600-63532800	Weak transcription	Cortex derived primary cultured neurospheres	brain
2	chr8:63527000-63531800	Enhancers	Fetal Intestine Large	intestine
3	chr8:63531600-63532800	Weak transcription	Fetal Intestine Small	intestine

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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