Variant report

Variant	rs16929302
Chromosome Location	chr8:63538623-63538624
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs12549995	0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1351365	0.87[EUR][1000 genomes]
rs1531657	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs16929287	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2127577	0.85[CEU][hapmap];0.84[EUR][1000 genomes]
rs4483149	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4738986	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4738991	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs55651027	0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs58103443	0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs58261377	0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62509503	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs62509504	0.80[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs62509505	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6985441	0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7812978	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7840692	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7844749	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs827687	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs862386	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs936614	0.80[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs936616	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs936618	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs936619	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs936620	0.87[EUR][1000 genomes]
rs961829	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018879	chr8:63281724-63937632	Enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv831340	chr8:63515126-63702660	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv890960	chr8:63516962-63629549	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs16929302	MYBL1	cis	cerebellum	SCAN

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:63537400-63543800	Weak transcription	Fetal Brain Female	brain
2	chr8:63537800-63538800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chr8:63538000-63540400	Enhancers	iPS-20b Cell Line	embryonic stem cell
4	chr8:63538200-63540200	Enhancers	Cortex derived primary cultured neurospheres	brain
5	chr8:63538200-63540400	Enhancers	iPS-18 Cell Line	embryonic stem cell
6	chr8:63538400-63539400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr8:63538400-63540200	Enhancers	HUES64 Cell Line	embryonic stem cell
8	chr8:63538400-63540400	Enhancers	HUES48 Cell Line	embryonic stem cell
9	chr8:63538600-63539000	Enhancers	ES-I3 Cell Line	embryonic stem cell
10	chr8:63538600-63539200	Enhancers	Brain Hippocampus Middle	brain
11	chr8:63538600-63539400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
12	chr8:63538600-63539400	Enhancers	Brain Substantia Nigra	brain

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