Variant report
| Variant | rs16929351 |
|---|---|
| Chromosome Location | chr8:63560383-63560384 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:24)
| rs_ID | r2[population] |
|---|---|
| rs16918927 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs16929168 | 1.00[EUR][1000 genomes] |
| rs16929206 | 1.00[EUR][1000 genomes] |
| rs16929234 | 1.00[EUR][1000 genomes] |
| rs16929308 | 1.00[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs16929371 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs16929390 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs16929430 | 1.00[EUR][1000 genomes] |
| rs16929437 | 1.00[EUR][1000 genomes] |
| rs2101043 | 1.00[EUR][1000 genomes] |
| rs2101044 | 1.00[EUR][1000 genomes] |
| rs2127581 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs57900808 | 1.00[EUR][1000 genomes] |
| rs58391948 | 1.00[EUR][1000 genomes] |
| rs58717549 | 1.00[EUR][1000 genomes] |
| rs60709086 | 1.00[EUR][1000 genomes] |
| rs6993807 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73256928 | 1.00[EUR][1000 genomes] |
| rs73256936 | 1.00[EUR][1000 genomes] |
| rs73256943 | 1.00[EUR][1000 genomes] |
| rs73256979 | 1.00[EUR][1000 genomes] |
| rs73264897 | 1.00[EUR][1000 genomes] |
| rs73266909 | 1.00[EUR][1000 genomes] |
| rs73266967 | 1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1018879 | chr8:63281724-63937632 | Enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 12 gene(s) | inside rSNPs | diseases |
| 2 | nsv831340 | chr8:63515126-63702660 | Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 3 | nsv890960 | chr8:63516962-63629549 | Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats | Chromatin interactive region | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr8:63558200-63561200 | Weak transcription | Cortex derived primary cultured neurospheres | brain |
| 2 | chr8:63559600-63561400 | Weak transcription | Brain Germinal Matrix | brain |
