Variant report

Variant	rs16929379
Chromosome Location	chr8:63574106-63574107
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs10086439	1.00[ASN][1000 genomes]
rs11986003	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11988844	0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11990729	0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11993139	0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11994250	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11997540	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13248275	1.00[ASN][1000 genomes]
rs13260313	1.00[ASN][1000 genomes]
rs13268135	1.00[ASN][1000 genomes]
rs13439148	0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs13439149	0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs16929324	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16929355	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16929366	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16929380	1.00[ASN][1000 genomes]
rs16929392	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16929407	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16929409	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16929424	1.00[ASN][1000 genomes]
rs16929428	1.00[ASN][1000 genomes]
rs17840589	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2127562	0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2127563	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2127564	0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs28608015	0.93[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs34160114	1.00[ASN][1000 genomes]
rs35029520	1.00[ASN][1000 genomes]
rs35915553	1.00[ASN][1000 genomes]
rs4562311	1.00[ASN][1000 genomes]
rs56083055	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57723519	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57786242	1.00[ASN][1000 genomes]
rs59113187	1.00[ASN][1000 genomes]
rs60508325	1.00[ASN][1000 genomes]
rs60781553	1.00[ASN][1000 genomes]
rs61408776	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6472043	1.00[ASN][1000 genomes]
rs6997907	0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7007446	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7016043	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73682630	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73682631	0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73683352	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73685419	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7820024	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7839654	1.00[ASN][1000 genomes]
rs961828	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9969432	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018879	chr8:63281724-63937632	Enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv831340	chr8:63515126-63702660	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv890960	chr8:63516962-63629549	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:63572400-63602600	Weak transcription	Cortex derived primary cultured neurospheres	brain

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