Variant report

Variant	rs16929424
Chromosome Location	chr8:63608390-63608391
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:63605230..63606982-chr8:63607135..63609318,2	K562	blood:

Extended variants
information (count: 51 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs10086439	1.00[ASN][1000 genomes]
rs11986003	0.95[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11988844	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11990729	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11993139	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11994250	1.00[ASN][1000 genomes]
rs11997540	0.95[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs13248275	1.00[ASN][1000 genomes]
rs13260313	1.00[ASN][1000 genomes]
rs13268135	1.00[ASN][1000 genomes]
rs13439148	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13439149	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16929324	1.00[ASN][1000 genomes]
rs16929355	1.00[ASN][1000 genomes]
rs16929366	1.00[ASN][1000 genomes]
rs16929379	1.00[ASN][1000 genomes]
rs16929380	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs16929392	1.00[ASN][1000 genomes]
rs16929407	0.95[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs16929409	1.00[ASN][1000 genomes]
rs16929428	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17840589	1.00[ASN][1000 genomes]
rs2127562	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2127563	1.00[ASN][1000 genomes]
rs2127564	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28608015	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34160114	1.00[ASN][1000 genomes]
rs35029520	1.00[ASN][1000 genomes]
rs35915553	1.00[ASN][1000 genomes]
rs4562311	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56083055	1.00[ASN][1000 genomes]
rs57786242	1.00[ASN][1000 genomes]
rs59113187	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs60508325	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs60781553	1.00[ASN][1000 genomes]
rs61408776	1.00[ASN][1000 genomes]
rs6472043	0.87[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6997907	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7007446	0.95[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7016043	1.00[ASN][1000 genomes]
rs73682630	1.00[ASN][1000 genomes]
rs73682631	1.00[ASN][1000 genomes]
rs73683352	1.00[ASN][1000 genomes]
rs73685419	1.00[ASN][1000 genomes]
rs7820024	1.00[ASN][1000 genomes]
rs7839654	1.00[ASN][1000 genomes]
rs961828	1.00[ASN][1000 genomes]
rs9969432	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018879	chr8:63281724-63937632	Enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv831340	chr8:63515126-63702660	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv890960	chr8:63516962-63629549	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs16929424	NOV	trans	brain	seeQTL
rs16929424	FGL2	trans	brain	seeQTL

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:63603400-63614400	Weak transcription	Fetal Brain Male	brain
2	chr8:63603400-63620000	Weak transcription	Brain Germinal Matrix	brain

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