Variant report

Variant	rs16929454
Chromosome Location	chr8:63614761-63614762
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs11989310	0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1471511	0.87[EUR][1000 genomes]
rs1471512	0.87[EUR][1000 genomes]
rs1480195	0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1600538	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs16918940	0.87[EUR][1000 genomes]
rs16929414	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs16929506	0.87[EUR][1000 genomes]
rs16929512	0.87[EUR][1000 genomes]
rs16929515	0.87[EUR][1000 genomes]
rs16929516	0.87[EUR][1000 genomes]
rs16929517	0.87[EUR][1000 genomes]
rs16929568	0.87[EUR][1000 genomes]
rs16929587	0.85[EUR][1000 genomes]
rs2199837	0.82[EUR][1000 genomes]
rs34116232	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3943271	0.87[EUR][1000 genomes]
rs4737608	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4737609	0.82[EUR][1000 genomes]
rs4738995	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4738996	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4739000	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4739002	0.87[EUR][1000 genomes]
rs4739003	0.83[EUR][1000 genomes]
rs4739004	0.87[EUR][1000 genomes]
rs4739008	0.87[EUR][1000 genomes]
rs56074674	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56209195	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs56254488	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57259426	0.83[EUR][1000 genomes]
rs62512374	0.87[EUR][1000 genomes]
rs62512420	0.85[EUR][1000 genomes]
rs62512421	0.85[EUR][1000 genomes]
rs6472042	0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6996757	0.87[EUR][1000 genomes]
rs7003189	0.87[EUR][1000 genomes]
rs7004183	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7005977	0.87[EUR][1000 genomes]
rs7008374	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs72653224	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7836787	0.87[EUR][1000 genomes]
rs7836794	0.86[EUR][1000 genomes]
rs931130	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018879	chr8:63281724-63937632	Enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv831340	chr8:63515126-63702660	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv890960	chr8:63516962-63629549	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:63603400-63620000	Weak transcription	Brain Germinal Matrix	brain
2	chr8:63614000-63614800	Enhancers	H1 Cell Line	embryonic stem cell
3	chr8:63614600-63617000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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