Variant report

Variant	rs16930023
Chromosome Location	chr8:63892585-63892586
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-RP11-32K4.2.1-6	chr8:63890420-63897460	NONHSAT126909

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10086603	0.84[EUR][1000 genomes]
rs10087307	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10093652	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10096151	0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10100534	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10106587	0.87[CEU][hapmap];0.84[CHB][hapmap];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10107109	0.83[EUR][1000 genomes]
rs11786957	0.85[CEU][hapmap];0.86[JPT][hapmap];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11995525	0.88[CEU][hapmap];0.85[CHB][hapmap];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs16929916	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs16929920	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs16929982	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs16930077	0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2043526	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2736683	0.83[CEU][hapmap];0.85[CHB][hapmap];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs28687189	0.81[EUR][1000 genomes]
rs28760056	0.85[EUR][1000 genomes]
rs4509318	0.84[EUR][1000 genomes]
rs58167727	0.83[EUR][1000 genomes]
rs58909118	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs61056009	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs61594679	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs719235	0.83[CEU][hapmap];0.85[CHB][hapmap];0.93[MEX][hapmap];0.82[TSI][hapmap];0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs72656522	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs72656527	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs72656534	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs72658314	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs72658324	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs72659840	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs72659846	0.84[EUR][1000 genomes]
rs7834288	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7838752	0.84[EUR][1000 genomes]
rs9298073	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018879	chr8:63281724-63937632	Enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv1033527	chr8:63673915-64073735	Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
3	nsv890964	chr8:63848556-63898146	Enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv6227	chr8:63892087-63936952	Weak transcription Strong transcription Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:63868600-63895800	Weak transcription	Fetal Brain Female	brain
2	chr8:63892000-63892600	Enhancers	Brain Germinal Matrix	brain
3	chr8:63892200-63892600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell

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