Variant report

Variant	rs16930036
Chromosome Location	chr8:63897136-63897137
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs16930012	0.85[AFR][1000 genomes]
rs16930019	0.85[AFR][1000 genomes]
rs16930025	0.83[LWK][hapmap];1.00[MEX][hapmap];0.87[MKK][hapmap]
rs16930090	0.82[LWK][hapmap];1.00[MEX][hapmap]
rs56118167	0.83[AFR][1000 genomes]
rs57274520	0.83[AFR][1000 genomes]
rs59593940	0.83[AFR][1000 genomes]
rs60280139	0.85[AFR][1000 genomes]
rs61571631	0.83[AFR][1000 genomes]
rs73683961	0.83[AFR][1000 genomes]
rs73683962	0.83[AFR][1000 genomes]
rs73683963	0.83[AFR][1000 genomes]
rs73684325	0.83[AFR][1000 genomes]
rs73684326	0.83[AFR][1000 genomes]
rs73684329	0.83[AFR][1000 genomes]
rs73684515	0.83[AFR][1000 genomes]
rs73684565	0.83[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018879	chr8:63281724-63937632	Enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv1033527	chr8:63673915-64073735	Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
3	nsv890964	chr8:63848556-63898146	Enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv6227	chr8:63892087-63936952	Weak transcription Strong transcription Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:63896200-63897600	Weak transcription	Fetal Intestine Large	intestine
2	chr8:63896400-63898800	Weak transcription	Fetal Intestine Small	intestine
3	chr8:63896400-63901000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr8:63896600-63900600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr8:63897000-63897400	Weak transcription	Rectal Mucosa Donor 31	rectum

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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