Variant report

Variant	rs169307
Chromosome Location	chr7:101746234-101746235
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr7:101746076-101746308	H1-hESC	embryonic stem cell:	n/a	n/a
2	POLR2A	chr7:101746036-101746274	H1-hESC	embryonic stem cell:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:101743613..101746521-chr7:101753167..101754806,2	K562	blood:

Variant related genes	Relation type
CUX1	TF binding region

Extended variants
information (count: 86 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:86)

rs_ID	r²[population]
rs10953358	0.95[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs1637257	0.96[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs1734879	0.96[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs1902	0.93[CEU][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs201435	1.00[CEU][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs201436	1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs201438	0.97[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs201440	0.95[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs201441	1.00[CEU][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs201442	1.00[CEU][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs201443	1.00[CEU][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs201445	1.00[CEU][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs201446	0.95[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs201447	1.00[CEU][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs201448	1.00[CEU][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs201449	1.00[CEU][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs201450	1.00[CEU][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs201451	0.95[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs201452	0.95[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs201453	0.95[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs201454	1.00[CEU][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs201455	1.00[CEU][hapmap];0.94[YRI][hapmap];0.95[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs201456	1.00[CEU][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs201457	0.97[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs201458	0.80[YRI][hapmap];0.97[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs201459	1.00[CEU][hapmap];0.94[YRI][hapmap];0.97[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs201461	0.95[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs201464	0.83[EUR][1000 genomes]
rs201468	1.00[CEU][hapmap];0.94[YRI][hapmap];0.97[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs201469	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs201470	0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs201471	0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs201472	0.95[AFR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs201475	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs201477	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs201478	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs201480	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs201481	0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs201482	0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs201485	0.81[AFR][1000 genomes];0.97[EUR][1000 genomes]
rs201486	0.86[AFR][1000 genomes];0.97[EUR][1000 genomes]
rs201489	0.96[AFR][1000 genomes];0.99[EUR][1000 genomes]
rs201490	1.00[CEU][hapmap];0.82[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.98[EUR][1000 genomes]
rs201491	0.86[CEU][hapmap]
rs201492	0.87[AFR][1000 genomes];0.98[EUR][1000 genomes]
rs201493	0.96[CEU][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.97[EUR][1000 genomes]
rs201497	0.86[AFR][1000 genomes];0.97[EUR][1000 genomes]
rs201498	1.00[CEU][hapmap];0.82[JPT][hapmap];0.94[YRI][hapmap];0.84[AFR][1000 genomes];0.97[EUR][1000 genomes]
rs201500	0.91[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs201502	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs201503	1.00[CEU][hapmap];0.90[CHB][hapmap];0.85[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs201504	0.84[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs201505	0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs201507	0.92[AFR][1000 genomes];0.97[EUR][1000 genomes]
rs201508	0.85[AFR][1000 genomes];0.97[EUR][1000 genomes]
rs201509	1.00[CEU][hapmap];0.82[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.97[EUR][1000 genomes]
rs201511	0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs201514	0.93[ASN][1000 genomes]
rs201515	0.93[ASN][1000 genomes]
rs201516	0.93[ASN][1000 genomes]
rs201517	0.93[ASN][1000 genomes]
rs201518	0.93[ASN][1000 genomes]
rs201519	0.93[ASN][1000 genomes]
rs201520	0.93[ASN][1000 genomes]
rs201521	0.93[ASN][1000 genomes]
rs201522	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs201523	0.91[ASN][1000 genomes]
rs201526	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs201527	0.92[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs201529	0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs201530	0.87[ASN][1000 genomes]
rs2529095	0.88[AFR][1000 genomes];0.99[EUR][1000 genomes]
rs2529373	0.89[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs2734782	0.90[AFR][1000 genomes];0.98[EUR][1000 genomes]
rs34247954	0.97[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs367333	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs380175	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs382228	0.97[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs411354	0.92[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs417013	0.81[CEU][hapmap];0.85[JPT][hapmap];0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs436287	0.92[CEU][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs443963	0.85[AMR][1000 genomes]
rs4729776	0.82[EUR][1000 genomes]
rs6465851	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6950791	1.00[CEU][hapmap];0.81[CHB][hapmap];1.00[JPT][hapmap];0.99[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6970800	0.99[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]

No data

Chromatin state (count:120 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:101708200-101765000	Weak transcription	Small Intestine	intestine
2	chr7:101715200-101749800	Weak transcription	Rectal Smooth Muscle	rectum
3	chr7:101715400-101749600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
4	chr7:101716000-101746600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr7:101716400-101758600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
6	chr7:101726200-101747800	Weak transcription	Osteobl	bone
7	chr7:101733200-101749600	Weak transcription	Esophagus	oesophagus
8	chr7:101733200-101758600	Weak transcription	Psoas Muscle	Psoas
9	chr7:101737400-101747600	Weak transcription	H1 Cell Line	embryonic stem cell
10	chr7:101737400-101754400	Weak transcription	Brain Angular Gyrus	brain
11	chr7:101738000-101749800	Weak transcription	Fetal Heart	heart
12	chr7:101738200-101747200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
13	chr7:101738200-101751800	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
14	chr7:101738200-101754400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
15	chr7:101738400-101760800	Weak transcription	NHDF-Ad	bronchial
16	chr7:101738600-101758400	Weak transcription	Colon Smooth Muscle	Colon
17	chr7:101738600-101763600	Strong transcription	Monocytes-CD14+_RO01746	blood
18	chr7:101738800-101754400	Weak transcription	Brain Germinal Matrix	brain
19	chr7:101738800-101763800	Strong transcription	Primary neutrophils fromperipheralblood	blood
20	chr7:101738800-101764200	Strong transcription	Fetal Thymus	thymus
21	chr7:101739000-101760600	Weak transcription	NHLF	lung
22	chr7:101739200-101760600	Weak transcription	HSMM	muscle
23	chr7:101739200-101763400	Strong transcription	Primary monocytes fromperipheralblood	blood
24	chr7:101739400-101751800	Strong transcription	Primary T cells from cord blood	blood
25	chr7:101739600-101752000	Strong transcription	Thymus	Thymus
26	chr7:101739800-101747600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
27	chr7:101740200-101747600	Weak transcription	Muscle Satellite Cultured Cells	--
28	chr7:101740200-101748000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
29	chr7:101740200-101753200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
30	chr7:101740400-101751800	Strong transcription	Spleen	Spleen
31	chr7:101740400-101763400	Strong transcription	Dnd41	blood
32	chr7:101740400-101764000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
33	chr7:101740600-101746600	Strong transcription	Skeletal Muscle Male	skeletal muscle
34	chr7:101740600-101746800	Strong transcription	Fetal Muscle Trunk	muscle
35	chr7:101740800-101752000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
36	chr7:101741000-101751600	Strong transcription	Fetal Stomach	stomach
37	chr7:101741000-101751800	Strong transcription	Adipose Nuclei	Adipose
38	chr7:101741000-101757200	Weak transcription	NH-A	brain
39	chr7:101741000-101765000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
40	chr7:101741200-101746600	Weak transcription	Fetal Kidney	kidney
41	chr7:101741200-101747000	Strong transcription	Lung	lung
42	chr7:101741200-101748200	Weak transcription	Brain Cingulate Gyrus	brain
43	chr7:101741200-101751400	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
44	chr7:101741200-101753000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
45	chr7:101741400-101748200	Weak transcription	Brain Inferior Temporal Lobe	brain
46	chr7:101741400-101751800	Strong transcription	Liver	Liver
47	chr7:101741400-101754000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
48	chr7:101741600-101747400	Weak transcription	HUES48 Cell Line	embryonic stem cell
49	chr7:101741600-101750000	Weak transcription	Fetal Brain Female	brain
50	chr7:101741600-101764800	Weak transcription	Stomach Mucosa	stomach

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