Variant report

Variant	rs16932765
Chromosome Location	chr9:15179418-15179419
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:15178556..15180974-chr9:15188192..15191171,2	MCF-7	breast:

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs16932763	1.00[AMR][1000 genomes]
rs16932789	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16932883	1.00[AMR][1000 genomes]
rs16932884	1.00[AMR][1000 genomes]
rs16932885	1.00[AMR][1000 genomes]
rs16932897	1.00[AMR][1000 genomes]
rs16932898	1.00[AMR][1000 genomes]
rs1746332	1.00[AMR][1000 genomes]
rs2800590	1.00[AMR][1000 genomes]
rs3866793	1.00[AMR][1000 genomes]
rs3915739	1.00[AMR][1000 genomes]
rs511591	1.00[AMR][1000 genomes]
rs56149191	1.00[AMR][1000 genomes]
rs56362643	1.00[AMR][1000 genomes]
rs7852971	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7871928	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831519	chr9:15018160-15209127	Weak transcription Flanking Active TSS Strong transcription Enhancers ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv1031340	chr9:15163004-15332769	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv524381	chr9:15165032-15202417	Strong transcription Weak transcription Enhancers Genic enhancers ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:92 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:15155600-15181400	Weak transcription	Rectal Smooth Muscle	rectum
2	chr9:15156200-15185400	Weak transcription	Brain Inferior Temporal Lobe	brain
3	chr9:15156600-15194200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
4	chr9:15156800-15181600	Weak transcription	Fetal Muscle Leg	muscle
5	chr9:15156800-15190400	Weak transcription	Brain Anterior Caudate	brain
6	chr9:15156800-15211800	Weak transcription	Skeletal Muscle Male	skeletal muscle
7	chr9:15159000-15211200	Weak transcription	HMEC	breast
8	chr9:15159200-15205800	Weak transcription	Muscle Satellite Cultured Cells	--
9	chr9:15161200-15181400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr9:15162000-15181600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr9:15162000-15183800	Weak transcription	Fetal Intestine Small	intestine
12	chr9:15162800-15193000	Weak transcription	Spleen	Spleen
13	chr9:15163000-15233000	Weak transcription	H9 Cell Line	embryonic stem cell
14	chr9:15163200-15185400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
15	chr9:15163200-15186800	Weak transcription	Fetal Kidney	kidney
16	chr9:15163400-15181400	Weak transcription	Fetal Stomach	stomach
17	chr9:15163800-15185200	Weak transcription	Skeletal Muscle Female	skeletal muscle
18	chr9:15165400-15181800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
19	chr9:15166000-15185200	Weak transcription	Pancreas	Pancrea
20	chr9:15166200-15211200	Weak transcription	NH-A	brain
21	chr9:15166400-15185200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
22	chr9:15166600-15180600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
23	chr9:15166600-15185200	Weak transcription	Lung	lung
24	chr9:15166800-15181400	Weak transcription	Gastric	stomach
25	chr9:15167000-15196400	Weak transcription	Psoas Muscle	Psoas
26	chr9:15167400-15189000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
27	chr9:15167400-15205600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
28	chr9:15167600-15183600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
29	chr9:15167600-15185400	Weak transcription	Colonic Mucosa	Colon
30	chr9:15167800-15193400	Strong transcription	Primary T cells fromperipheralblood	blood
31	chr9:15167800-15196200	Weak transcription	Fetal Muscle Trunk	muscle
32	chr9:15168000-15181000	Weak transcription	Colon Smooth Muscle	Colon
33	chr9:15168000-15181400	Weak transcription	Primary B cells from peripheral blood	blood
34	chr9:15168000-15182200	Strong transcription	Primary T cells from cord blood	blood
35	chr9:15168000-15196800	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
36	chr9:15168200-15181400	Weak transcription	Aorta	Aorta
37	chr9:15168200-15206800	Weak transcription	NHEK	skin
38	chr9:15169000-15182000	Strong transcription	Fetal Intestine Large	intestine
39	chr9:15169000-15193400	Strong transcription	Primary T helper cells fromperipheralblood	blood
40	chr9:15169200-15196600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
41	chr9:15169600-15184600	Weak transcription	HUES6 Cell Line	embryonic stem cell
42	chr9:15169600-15186800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
43	chr9:15170400-15211000	Weak transcription	Brain Angular Gyrus	brain
44	chr9:15170800-15189400	Weak transcription	Osteobl	bone
45	chr9:15171000-15228600	Weak transcription	Stomach Mucosa	stomach
46	chr9:15171200-15185400	Weak transcription	Esophagus	oesophagus
47	chr9:15172400-15181400	Weak transcription	Adipose Nuclei	Adipose
48	chr9:15172400-15181400	Weak transcription	Rectal Mucosa Donor 31	rectum
49	chr9:15172600-15192800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
50	chr9:15173000-15194400	Weak transcription	Brain Hippocampus Middle	brain

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