Variant report

Variant	rs16933326
Chromosome Location	chr9:15489081-15489082
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:15478524..15480549-chr9:15486729..15489229,2	MCF-7	breast:

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs12380487	0.82[YRI][hapmap]
rs16932948	1.00[MEX][hapmap]
rs16933212	0.82[ASW][hapmap];1.00[MEX][hapmap];0.92[YRI][hapmap]
rs16933270	1.00[MEX][hapmap]
rs16933317	0.92[YRI][hapmap];0.98[AFR][1000 genomes]
rs16933330	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs16933350	0.92[YRI][hapmap]
rs57318120	0.82[AFR][1000 genomes]
rs58472071	1.00[AFR][1000 genomes]
rs7043763	0.90[AFR][1000 genomes]
rs73408314	0.89[AFR][1000 genomes]
rs73413273	0.83[AFR][1000 genomes]
rs73423334	0.95[AFR][1000 genomes]
rs73423336	0.98[AFR][1000 genomes]
rs7847771	1.00[YRI][hapmap];0.83[AFR][1000 genomes]
rs7856486	0.88[AFR][1000 genomes]
rs7856657	0.92[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv517975	chr9:15286446-15534070	Weak transcription Genic enhancers Active TSS Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv892625	chr9:15326251-16064850	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
3	nsv892626	chr9:15389610-15694690	Flanking Active TSS Active TSS Weak transcription Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
4	nsv892627	chr9:15397969-15909450	Enhancers Flanking Active TSS Strong transcription Weak transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
5	nsv892628	chr9:15420805-15528290	Strong transcription Active TSS Weak transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:119 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:15433400-15492400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
2	chr9:15439000-15492200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
3	chr9:15442800-15508400	Strong transcription	Fetal Thymus	thymus
4	chr9:15443200-15490400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
5	chr9:15443200-15492400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr9:15443800-15492200	Strong transcription	HUES64 Cell Line	embryonic stem cell
7	chr9:15444000-15492400	Strong transcription	HUES48 Cell Line	embryonic stem cell
8	chr9:15444400-15495200	Weak transcription	Fetal Heart	heart
9	chr9:15444600-15491200	Strong transcription	HUES6 Cell Line	embryonic stem cell
10	chr9:15447000-15509800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
11	chr9:15449000-15492200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr9:15449800-15509000	Weak transcription	Small Intestine	intestine
13	chr9:15452200-15492400	Weak transcription	Right Ventricle	heart
14	chr9:15454600-15508600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
15	chr9:15457000-15492400	Weak transcription	Lung	lung
16	chr9:15459000-15492200	Strong transcription	H1 Cell Line	embryonic stem cell
17	chr9:15460800-15510000	Weak transcription	Esophagus	oesophagus
18	chr9:15461000-15492200	Strong transcription	iPS-18 Cell Line	embryonic stem cell
19	chr9:15461600-15492400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
20	chr9:15461600-15492800	Weak transcription	Pancreas	Pancrea
21	chr9:15462800-15505200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
22	chr9:15466200-15492400	Weak transcription	Gastric	stomach
23	chr9:15466600-15492400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
24	chr9:15467200-15501000	Weak transcription	Colon Smooth Muscle	Colon
25	chr9:15467400-15505600	Weak transcription	Skeletal Muscle Male	skeletal muscle
26	chr9:15468800-15492400	Weak transcription	Colonic Mucosa	Colon
27	chr9:15468800-15492400	Weak transcription	Spleen	Spleen
28	chr9:15469200-15491800	Weak transcription	Stomach Smooth Muscle	stomach
29	chr9:15469200-15505600	Weak transcription	NHLF	lung
30	chr9:15471000-15492600	Strong transcription	Primary B cells from peripheral blood	blood
31	chr9:15472200-15509000	Weak transcription	HMEC	breast
32	chr9:15473800-15492200	Weak transcription	Liver	Liver
33	chr9:15476400-15504000	Weak transcription	Skeletal Muscle Female	skeletal muscle
34	chr9:15476600-15492200	Weak transcription	Left Ventricle	heart
35	chr9:15476600-15508800	Weak transcription	Rectal Smooth Muscle	rectum
36	chr9:15476600-15510000	Weak transcription	Sigmoid Colon	Sigmoid Colon
37	chr9:15477000-15492400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
38	chr9:15477000-15492400	Weak transcription	Ovary	ovary
39	chr9:15477000-15504800	Weak transcription	HSMM	muscle
40	chr9:15477000-15509600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
41	chr9:15477200-15492000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
42	chr9:15477400-15492200	Weak transcription	Fetal Brain Male	brain
43	chr9:15477600-15492400	Weak transcription	Fetal Kidney	kidney
44	chr9:15477800-15498200	Weak transcription	Placenta	Placenta
45	chr9:15478000-15505000	Weak transcription	Adipose Nuclei	Adipose
46	chr9:15478200-15492200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
47	chr9:15480000-15492400	Strong transcription	Primary T cells fromperipheralblood	blood
48	chr9:15480200-15490800	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
49	chr9:15480200-15505200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
50	chr9:15480400-15492200	Weak transcription	Duodenum Smooth Muscle	Duodenum

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