Variant report

Variant	rs16933330
Chromosome Location	chr9:15498447-15498448
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:15494263..15496917-chr9:15497648..15499315,2	K562	blood:
2	chr9:15497676..15499594-chr9:15514470..15516149,2	MCF-7	breast:

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs12380487	0.82[YRI][hapmap]
rs16933212	0.91[YRI][hapmap];1.00[AMR][1000 genomes]
rs16933317	0.91[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16933326	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs16933350	0.91[YRI][hapmap]
rs57318120	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58472071	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7043763	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73408314	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73411056	1.00[AMR][1000 genomes]
rs73413273	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73423334	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73423336	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7847771	1.00[YRI][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7856486	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7856657	0.91[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv517975	chr9:15286446-15534070	Weak transcription Genic enhancers Active TSS Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv892625	chr9:15326251-16064850	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
3	nsv892626	chr9:15389610-15694690	Flanking Active TSS Active TSS Weak transcription Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
4	nsv892627	chr9:15397969-15909450	Enhancers Flanking Active TSS Strong transcription Weak transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
5	nsv892628	chr9:15420805-15528290	Strong transcription Active TSS Weak transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:120 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:15442800-15508400	Strong transcription	Fetal Thymus	thymus
2	chr9:15447000-15509800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr9:15449800-15509000	Weak transcription	Small Intestine	intestine
4	chr9:15454600-15508600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
5	chr9:15460800-15510000	Weak transcription	Esophagus	oesophagus
6	chr9:15462800-15505200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr9:15467200-15501000	Weak transcription	Colon Smooth Muscle	Colon
8	chr9:15467400-15505600	Weak transcription	Skeletal Muscle Male	skeletal muscle
9	chr9:15469200-15505600	Weak transcription	NHLF	lung
10	chr9:15472200-15509000	Weak transcription	HMEC	breast
11	chr9:15476400-15504000	Weak transcription	Skeletal Muscle Female	skeletal muscle
12	chr9:15476600-15508800	Weak transcription	Rectal Smooth Muscle	rectum
13	chr9:15476600-15510000	Weak transcription	Sigmoid Colon	Sigmoid Colon
14	chr9:15477000-15504800	Weak transcription	HSMM	muscle
15	chr9:15477000-15509600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr9:15478000-15505000	Weak transcription	Adipose Nuclei	Adipose
17	chr9:15480200-15505200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr9:15481600-15509600	Weak transcription	Aorta	Aorta
19	chr9:15482600-15501000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
20	chr9:15483000-15504800	Weak transcription	Brain Hippocampus Middle	brain
21	chr9:15483000-15504800	Weak transcription	Brain Substantia Nigra	brain
22	chr9:15485200-15499200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
23	chr9:15485800-15501000	Weak transcription	HUVEC	blood vessel
24	chr9:15485800-15509800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
25	chr9:15486000-15505000	Weak transcription	Rectal Mucosa Donor 31	rectum
26	chr9:15486200-15501600	Weak transcription	Rectal Mucosa Donor 29	rectum
27	chr9:15486400-15505800	Weak transcription	Muscle Satellite Cultured Cells	--
28	chr9:15486600-15499000	Weak transcription	NH-A	brain
29	chr9:15486600-15504000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
30	chr9:15486800-15505600	Weak transcription	K562	blood
31	chr9:15488600-15501000	Weak transcription	Primary monocytes fromperipheralblood	blood
32	chr9:15488600-15502000	Weak transcription	Brain Cingulate Gyrus	brain
33	chr9:15488800-15505400	Weak transcription	NHDF-Ad	bronchial
34	chr9:15492600-15502000	Weak transcription	Liver	Liver
35	chr9:15492600-15508200	Weak transcription	Brain Angular Gyrus	brain
36	chr9:15492600-15509800	Weak transcription	Colonic Mucosa	Colon
37	chr9:15492800-15499200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
38	chr9:15492800-15505800	Weak transcription	Fetal Brain Male	brain
39	chr9:15493000-15499000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
40	chr9:15493000-15500200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
41	chr9:15493000-15500200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
42	chr9:15493000-15500400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
43	chr9:15493000-15500400	Weak transcription	Fetal Stomach	stomach
44	chr9:15493000-15501800	Weak transcription	Left Ventricle	heart
45	chr9:15493000-15502200	Weak transcription	Cortex derived primary cultured neurospheres	brain
46	chr9:15493000-15502200	Weak transcription	Brain Inferior Temporal Lobe	brain
47	chr9:15493000-15502200	Weak transcription	Duodenum Mucosa	Duodenum
48	chr9:15493000-15502200	Weak transcription	Hela-S3	cervix
49	chr9:15493000-15504400	Weak transcription	Duodenum Smooth Muscle	Duodenum
50	chr9:15493000-15504600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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