Variant report

Variant	rs16933544
Chromosome Location	chr9:15753072-15753073
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 92 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:86)

rs_ID	r²[population]
rs10962193	0.85[CHB][hapmap];1.00[JPT][hapmap]
rs10962194	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs1169470	0.89[JPT][hapmap]
rs1177610	0.89[JPT][hapmap]
rs1177611	0.89[JPT][hapmap]
rs11999303	0.85[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes]
rs12000772	0.85[CHB][hapmap]
rs12005062	0.85[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes]
rs12005485	1.00[EUR][1000 genomes]
rs12005521	1.00[EUR][1000 genomes]
rs12682932	0.85[CHB][hapmap]
rs12684785	0.89[JPT][hapmap];1.00[TSI][hapmap]
rs12684808	0.82[CHD][hapmap];0.89[JPT][hapmap];1.00[TSI][hapmap]
rs12685082	1.00[JPT][hapmap]
rs12685963	1.00[EUR][1000 genomes]
rs1328287	0.89[JPT][hapmap]
rs1396705	1.00[CHB][hapmap];0.89[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1536685	1.00[JPT][hapmap]
rs1536686	0.89[JPT][hapmap]
rs1536687	0.89[JPT][hapmap]
rs1578558	0.85[CHB][hapmap]
rs16933504	0.89[JPT][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs16933805	1.00[JPT][hapmap]
rs16933814	1.00[JPT][hapmap]
rs1815697	0.89[JPT][hapmap]
rs1935220	0.89[JPT][hapmap]
rs1935221	0.89[JPT][hapmap]
rs2066291	0.85[CHB][hapmap]
rs2094519	0.89[JPT][hapmap]
rs2105314	0.89[JPT][hapmap]
rs2794624	0.89[JPT][hapmap]
rs2794625	0.89[JPT][hapmap]
rs2794627	0.88[JPT][hapmap]
rs2794628	0.89[JPT][hapmap]
rs2794632	0.89[JPT][hapmap]
rs2794633	0.89[JPT][hapmap]
rs2987060	0.88[JPT][hapmap]
rs2987061	0.89[JPT][hapmap]
rs2987062	0.89[JPT][hapmap]
rs3008691	0.89[JPT][hapmap]
rs3008693	0.89[JPT][hapmap]
rs3008698	0.89[JPT][hapmap]
rs34816651	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4372097	1.00[CHB][hapmap]
rs59761231	0.88[ASN][1000 genomes]
rs60572069	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6474950	0.82[JPT][hapmap];0.83[ASN][1000 genomes]
rs6474968	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7021778	0.89[JPT][hapmap]
rs7022810	0.91[ASN][1000 genomes]
rs7026090	0.85[CHB][hapmap];0.85[JPT][hapmap];1.00[EUR][1000 genomes]
rs7029375	0.85[CHB][hapmap];0.88[JPT][hapmap]
rs7029410	0.85[CHB][hapmap];0.86[JPT][hapmap];1.00[EUR][1000 genomes]
rs7032595	1.00[CHB][hapmap];0.94[CHD][hapmap];0.89[JPT][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7035048	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7039881	0.85[CHB][hapmap]
rs7040071	0.85[CHB][hapmap];0.83[CHD][hapmap];0.87[GIH][hapmap];0.88[JPT][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs7040549	1.00[EUR][1000 genomes]
rs7040580	0.85[CHB][hapmap];0.88[JPT][hapmap];1.00[EUR][1000 genomes]
rs7044984	1.00[JPT][hapmap]
rs73416209	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs73416213	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs73416233	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73416254	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73416261	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73416267	0.98[ASN][1000 genomes]
rs73416285	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7388793	0.85[CHB][hapmap]
rs770194	0.85[CHB][hapmap]
rs770198	0.85[CHB][hapmap]
rs770199	0.85[CHB][hapmap]
rs770200	0.85[CHB][hapmap]
rs770201	0.85[CHB][hapmap]
rs770202	0.85[CHB][hapmap]
rs770207	0.89[JPT][hapmap]
rs770219	0.89[JPT][hapmap]
rs7847946	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7852250	0.85[CHB][hapmap]
rs7854094	0.98[ASN][1000 genomes]
rs7861533	1.00[EUR][1000 genomes]
rs7866472	1.00[JPT][hapmap]
rs7866699	0.85[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes]
rs7867018	0.85[CHB][hapmap];0.88[JPT][hapmap];1.00[EUR][1000 genomes]
rs7869609	0.85[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7870166	0.85[CHB][hapmap];0.94[CHD][hapmap];0.88[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7870244	0.85[CHB][hapmap];0.94[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv892625	chr9:15326251-16064850	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
2	nsv892627	chr9:15397969-15909450	Enhancers Flanking Active TSS Strong transcription Weak transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
3	esv2752286	chr9:15578017-15794897	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv892632	chr9:15590116-15869845	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv892633	chr9:15604746-15889411	Weak transcription Enhancers ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv892635	chr9:15731775-15876507	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:15737000-15754000	Weak transcription	Gastric	stomach
2	chr9:15742600-15769600	Weak transcription	Psoas Muscle	Psoas
3	chr9:15747200-15759600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr9:15748000-15757600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr9:15748000-15758000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
6	chr9:15748600-15755200	Weak transcription	Primary hematopoietic stem cells	blood
7	chr9:15752800-15755800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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