Variant report

Variant	rs16933626
Chromosome Location	chr9:15785931-15785932
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:15778842..15781676-chr9:15783903..15785972,2	MCF-7	breast:

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs12682932	1.00[YRI][hapmap]
rs12683980	1.00[YRI][hapmap]
rs12685476	0.88[YRI][hapmap]
rs12686591	0.88[YRI][hapmap]
rs16933593	0.89[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16933603	0.89[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16933814	0.88[YRI][hapmap];0.82[AFR][1000 genomes]
rs2066291	1.00[YRI][hapmap]
rs34816651	0.89[AFR][1000 genomes]
rs60572069	0.87[AFR][1000 genomes]
rs6474950	0.90[AFR][1000 genomes]
rs6474968	0.87[AFR][1000 genomes]
rs7025415	0.89[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7026629	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7035048	0.89[YRI][hapmap];0.88[AFR][1000 genomes]
rs7044984	0.88[YRI][hapmap];0.83[AFR][1000 genomes]
rs7048479	0.86[AFR][1000 genomes]
rs73416209	0.90[AFR][1000 genomes]
rs73416213	0.82[AFR][1000 genomes]
rs73416233	0.89[AFR][1000 genomes]
rs73416254	0.88[AFR][1000 genomes]
rs73416267	0.90[AFR][1000 genomes]
rs73416285	0.88[AFR][1000 genomes]
rs73418137	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7847946	0.87[AFR][1000 genomes]
rs7856304	0.82[AFR][1000 genomes]
rs7861533	0.82[AFR][1000 genomes]
rs7865705	0.89[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7866472	1.00[YRI][hapmap];0.82[AFR][1000 genomes]
rs7866699	1.00[YRI][hapmap]
rs7867018	1.00[YRI][hapmap]
rs7867521	0.80[AFR][1000 genomes]
rs7869609	0.89[YRI][hapmap];0.85[AFR][1000 genomes]
rs7870166	0.88[YRI][hapmap];0.90[AFR][1000 genomes]
rs7873842	0.87[AFR][1000 genomes]
rs906798	0.92[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv892625	chr9:15326251-16064850	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
2	nsv892627	chr9:15397969-15909450	Enhancers Flanking Active TSS Strong transcription Weak transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
3	esv2752286	chr9:15578017-15794897	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv892632	chr9:15590116-15869845	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv892633	chr9:15604746-15889411	Weak transcription Enhancers ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv892635	chr9:15731775-15876507	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv528964	chr9:15760822-15875162	Enhancers Weak transcription ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:15756200-15790800	Weak transcription	Primary hematopoietic stem cells	blood
2	chr9:15775800-15786600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr9:15777000-15810600	Weak transcription	Pancreas	Pancrea
4	chr9:15779000-15791200	Weak transcription	Stomach Smooth Muscle	stomach
5	chr9:15781200-15790800	Weak transcription	Fetal Thymus	thymus
6	chr9:15783200-15788600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
7	chr9:15783600-15802000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr9:15784600-15790200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr9:15785000-15808600	Weak transcription	Aorta	Aorta
10	chr9:15785400-15786800	Weak transcription	Esophagus	oesophagus
11	chr9:15785600-15788000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr9:15785600-15788000	Weak transcription	Duodenum Mucosa	Duodenum
13	chr9:15785800-15786800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr9:15785800-15786800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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