Variant report

Variant	rs16933829
Chromosome Location	chr11:17115676-17115677
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:17098682..17100639-chr11:17114655..17116315,2	K562	blood:
2	chr11:17113019..17115977-chr11:17116929..17118589,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000110700	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs11820060	0.92[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs11826763	1.00[CEU][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.92[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs16924900	1.00[ASW][hapmap];1.00[CEU][hapmap];0.83[LWK][hapmap];1.00[MEX][hapmap];0.81[MKK][hapmap];1.00[TSI][hapmap];0.82[YRI][hapmap]
rs16933837	1.00[ASW][hapmap];1.00[CEU][hapmap];0.83[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];1.00[TSI][hapmap];0.82[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv467711	chr11:17027555-17320797	Weak transcription Strong transcription Active TSS Genic enhancers Flanking Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
2	nsv553568	chr11:17027555-17320797	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	55 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs16933829	NUCB2	cis	lymphoblastoid	seeQTL

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:17100400-17119200	Weak transcription	Esophagus	oesophagus
2	chr11:17100400-17119200	Weak transcription	Pancreas	Pancrea
3	chr11:17100400-17119800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr11:17100400-17157200	Weak transcription	Fetal Heart	heart
5	chr11:17100600-17124200	Weak transcription	Fetal Brain Male	brain
6	chr11:17100800-17119600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr11:17101600-17145000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr11:17105400-17172800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr11:17106800-17156600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr11:17107000-17167200	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr11:17107800-17147200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr11:17108200-17116800	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr11:17108200-17141400	Strong transcription	Liver	Liver
14	chr11:17108200-17177400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr11:17108400-17117000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr11:17108600-17172800	Weak transcription	Pancreatic Islets	Pancreatic Islet
17	chr11:17108800-17126800	Strong transcription	Osteobl	bone
18	chr11:17109000-17116400	Strong transcription	Primary T helper cells fromperipheralblood	blood
19	chr11:17109000-17116800	Strong transcription	Monocytes-CD14+_RO01746	blood
20	chr11:17109000-17117000	Strong transcription	iPS-20b Cell Line	embryonic stem cell
21	chr11:17109000-17117000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
22	chr11:17109000-17121600	Strong transcription	Adipose Nuclei	Adipose
23	chr11:17109000-17121800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
24	chr11:17109200-17115800	Strong transcription	Duodenum Smooth Muscle	Duodenum
25	chr11:17109200-17116800	Strong transcription	Duodenum Mucosa	Duodenum
26	chr11:17109200-17144600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
27	chr11:17109400-17116800	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
28	chr11:17109400-17128600	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
29	chr11:17109400-17132600	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
30	chr11:17109400-17148400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
31	chr11:17109600-17116800	Strong transcription	HUES6 Cell Line	embryonic stem cell
32	chr11:17109600-17116800	Strong transcription	Primary monocytes fromperipheralblood	blood
33	chr11:17109600-17127600	Strong transcription	iPS-18 Cell Line	embryonic stem cell
34	chr11:17109600-17147000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
35	chr11:17109800-17116800	Strong transcription	Placenta	Placenta
36	chr11:17109800-17117000	Strong transcription	HUES48 Cell Line	embryonic stem cell
37	chr11:17109800-17121600	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
38	chr11:17109800-17158400	Strong transcription	HUES64 Cell Line	embryonic stem cell
39	chr11:17110000-17116000	Strong transcription	Primary neutrophils fromperipheralblood	blood
40	chr11:17110000-17116800	Strong transcription	Primary B cells from peripheral blood	blood
41	chr11:17110000-17116800	Strong transcription	Primary T helper cells PMA-I stimulated	--
42	chr11:17110000-17116800	Strong transcription	Ovary	ovary
43	chr11:17110000-17116800	Strong transcription	Rectal Mucosa Donor 31	rectum
44	chr11:17110000-17118000	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
45	chr11:17110000-17121600	Strong transcription	Fetal Muscle Leg	muscle
46	chr11:17110000-17122200	Strong transcription	H1 Cell Line	embryonic stem cell
47	chr11:17110000-17128200	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
48	chr11:17110000-17128400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
49	chr11:17110200-17115800	Strong transcription	Skeletal Muscle Female	skeletal muscle
50	chr11:17110200-17116600	Strong transcription	Primary T cells from cord blood	blood

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